Geobacillus sp. GHH01: GHH_c11940
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Entry
GHH_c11940 CDS
T02455
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ggh
Geobacillus sp. GHH01
Pathway
ggh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ggh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GHH_c11940 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ggh03019
]
GHH_c11940 (pnp)
03016 Transfer RNA biogenesis [BR:
ggh03016
]
GHH_c11940 (pnp)
Enzymes [BR:
ggh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
GHH_c11940 (pnp)
Messenger RNA biogenesis [BR:
ggh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
GHH_c11940 (pnp)
Transfer RNA biogenesis [BR:
ggh03016
]
Prokaryotic type
tRNA degradation factors
GHH_c11940 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH-I_KHDC4-BBP
SPATA25
KH_5
S1_RRP5
OB_RRP5_4th
KorB
Motif
Other DBs
NCBI-ProteinID:
AGE21732
UniProt:
L7ZXF1
LinkDB
All DBs
Position
1162906..1165077
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AA seq
723 aa
AA seq
DB search
MEQEKRVFSIDVAGRPLIIETGELAKQANGAALVRYGDTVVLSTATASREAKNVDFFPLT
VNYEERLYAVGKIPGGFIKREGRPSEKAILVSRLIDRPIRPLFAEGFRNEVQVVSMVMSV
DQDCAPEVAALIGSSVALTISDIPFEGPIAGVIVGRVDGQFVINPTVEQMEKSDLHLVVA
GTKDAINMVEAGADEVPEEVILEAIMFGHEEVKRLIAFQEEIAAQVGKEKMEVVLYEPDP
ALEAEIRQLAEADIKRAVQVPEKLARDAAIEDVKAGVIAKYEAEEADEEKLKQVQEILHK
LVKEEVRRLITVEKIRPDGRKVDEIRPLSSAVGVLPRTHGSGLFTRGQTQVLSICTLGAL
GDVQILDGLDLEESKRFMHHYNFPPFSVGETGPMRGPGRREIGHGALGERALEPVVPSER
EFPYTIRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKNDDHYTILT
DIQGIEDHLGDMDFKVAGTRKGVTALQMDIKIKGLTREILEEALMQARKGRLEILDHMMQ
TLSEPRKELSKYAPKILIMHINPDKIREVIGPSGKQINKIIDETGVKIDIEQDGTIFISS
VDEAANQKAKQIIEDIVREVEVGQVYLGKVKRIEKFGAFVELFNGKDGLVHISELAEGRV
GKVEDVVSIGDEILVKVTEIDKQGRVNLSRKAVLRDARNIGGELPRESREKRGRRPERHR
MKP
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atggaacaagagaaacgcgtgttttccatcgatgtggccgggcggccgctcatcattgag
accggcgagctggcgaaacaggcgaatggcgcggcgctcgtccgctacggcgatacggtc
gtgttgagcacagccaccgcgtcgcgagaggcgaaaaacgttgactttttcccgctcacc
gtcaactacgaggaacggttgtatgcggttggaaaaattcctggcgggtttattaagcgc
gaaggtcgcccgagcgagaaagccattttggtgagccgtctcatcgaccgaccgattcgc
ccgctgtttgccgaaggattccgcaacgaagtgcaagtcgtctcgatggtcatgagcgtt
gatcaagactgcgcgccggaagtagcggccttaatcggttcgtcggtggcgctgacgatt
tccgacattccgtttgaagggccgatcgccggtgtcatcgtcggccgcgtcgacggccag
tttgtcatcaatccgacggtcgagcaaatggaaaaaagcgatctgcatcttgtcgtcgcc
ggcacaaaagatgcgatcaacatggtggaagccggggcagatgaggtgccggaagaagtg
attttggaagcgatcatgttcggccatgaggaagtgaagcggctcatcgccttccaagag
gaaatcgccgcccaagtcggcaaagaaaaaatggaagtcgtcctttacgagccggatcca
gcgctggaggcggaaatccgccagcttgctgaagcggacattaagcgagcggtgcaagtg
ccggagaaactggcgcgcgatgctgccattgaagatgtgaaagctggcgtcatcgccaaa
tatgaggcggaagaagcggatgaggagaagctcaagcaagtacaggaaattttgcataaa
ctcgtaaaagaggaagtgcgccgtttgatcacggtcgagaaaatccgtccggacgggcgc
aaagtcgatgaaatccgtccgctttcatcggcggtcggcgtcctgccgcgcacgcacggc
tccggtttgtttacgcgcgggcagacgcaagtgttgagcatttgtacgcttggggcgctt
ggcgacgtgcaaattttggacgggcttgaccttgaagaatcgaagcggtttatgcaccat
tacaacttcccgccgttttccgtcggggaaaccgggccgatgcgcgggccggggcgtcgt
gaaatcggacacggggcgcttggcgaacgggcgctcgagccggtcgtgccgtcggagcgc
gaattcccgtatacgatccgcctcgtttcagaagtgcttgagtcgaacggctcgacatcg
caggccagcatttgcgccagcacgctggcgatgatggatgctggggtgccgattaaagca
ccggtcgccggcattgccatggggcttgtgaaaaacgacgaccattacacgattttgacg
gacattcaaggcatcgaagaccatcttggcgatatggactttaaagtcgccggcacgaga
aaaggcgtgacggcattgcaaatggacattaaaataaaaggattgacgcgcgagattttg
gaagaggcgctcatgcaagcgcgcaaagggcggctcgagattttggatcatatgatgcaa
acgctcagcgaaccgcgcaaagagctgtccaaatatgcaccgaaaattttgatcatgcac
atcaacccggacaaaatccgggaggtgatcggaccaagcggcaagcagatcaacaaaatc
atcgacgaaaccggcgtcaaaatcgacatcgaacaagacggcacgattttcatctcgtct
gtggatgaagcagccaaccaaaaagcgaagcaaatcatcgaagacatcgtccgtgaagtc
gaagtcggccaagtgtacttaggcaaagtgaaacggattgaaaaattcggcgccttcgtt
gagttgttcaacggcaaagacgggcttgtccatatttccgagctcgctgaagggcgggtc
ggcaaagtcgaagacgtcgtttcgattggcgatgaaattttagtgaaagtaacggaaatc
gataagcaagggcgcgtcaacctgtcgcgcaaagcggtgttgcgcgatgcccgcaacatt
ggaggggaactgccgcgggaatctagggaaaaacgaggaagacggccggagcgccatcgc
atgaagccttag
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