Geobacillus sp. GHH01: GHH_c12220
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Entry
GHH_c12220 CDS
T02455
Symbol
ymdA
Name
(GenBank) 2',3'-cyclic-nucleotide 2'-phosphodiesterase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
ggh
Geobacillus sp. GHH01
Pathway
ggh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ggh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GHH_c12220 (ymdA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ggh03019
]
GHH_c12220 (ymdA)
Messenger RNA biogenesis [BR:
ggh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GHH_c12220 (ymdA)
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Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
KH_2
HHH_5
Motif
Other DBs
NCBI-ProteinID:
AGE21760
UniProt:
L7ZVP0
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Position
1194420..1195976
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AA seq
518 aa
AA seq
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MGSIIISALLALVIGAVVGFFVRKSIAEAKIGGAKAAAEQLIEEAKREADALKKEALLEA
KDEIHKLRTEAERDIRDRRSELQKQENRLMQKEENLDRKDEALNKREALLEAKEEALNER
QQHIEQMESKVEALVKQQQAELERISGLTRDDARQLILERVEKELSHEIAMMIKEAETRA
KEEADKRAKAILSLAIQRCAADHVAETTVSVVNLPNDEMKGRIIGREGRNIRTLETLTGI
DLIIDDTPEAVILSGFDPIRRETARIALDKLVQDGRIHPARIEEMVEKARREVDEHIREV
GEQTTFEVGVHGLHPDLIKILGRLKFRTSYGQNVLKHSVEVAFLAGLMAAELGEDEMLAR
RAGLLHDIGKAIDHEVEGSHVEIGVELATKYKEHPVVINSIASHHGDTEPTSVIAVLVAA
ADALSAARPGARSETLENYIRRLEKLEEIAESYEGVEKSYAIQAGREVRIMVKPDMIDDL
EAHRLARDIRKRIEEELDYPGHIKVTVIRETRAVEYAK
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
atgggttcgatcatcatctccgctttgcttgccttagtcattggtgccgttgttggcttt
tttgttcgcaaatcgattgccgaagcgaaaatcggcggggcgaaagccgctgccgaacag
ctgattgaggaggcgaaacgcgaggcggacgccttgaaaaaagaagcgcttctcgaagcg
aaagacgagattcataaactgcgtacggaggcggagcgtgatatccgcgaccggagaagc
gagctccaaaaacaagaaaaccgcctgatgcaaaaggaggaaaatctcgaccgcaaagat
gaagcgctcaacaaacgtgaggcgttgcttgaggcaaaggaagaagcgttgaacgaaaga
caacagcatattgaacaaatggaaagcaaagtggaagcgctcgtcaaacaacaacaagcc
gaacttgaacgcatttccggcctgacgcgcgacgatgcccgccagctcattttagagcgc
gttgagaaagagctgtcgcatgagattgcgatgatgatcaaagaggcggaaacgcgggcg
aaagaggaggcagacaaacgggcaaaggcgattttgtcgcttgccatccaacgttgcgcc
gccgaccatgtcgccgaaacgacggtttccgtcgtcaatttgccaaacgacgaaatgaaa
gggcggatcatcgggcgcgaagggcggaacatccgcacgctcgagacgttgaccggcatc
gatttgatcatcgacgatacgccggaagcggtcattttgtccggatttgacccgattcgc
cgcgagacggcgcgcatcgcgctcgataagcttgtgcaagatggccgcatccatccagcg
cgcattgaggaaatggtcgaaaaggcgcgccgcgaagtggatgagcatatccgcgaagtc
ggcgaacagacgacgtttgaagtcggtgttcacggcttgcatccggatttgatcaaaatt
ttagggcggctcaagttccgaacgagctacggacaaaacgtgctgaaacattcggtggaa
gtggcgtttttagccggactgatggcggccgagcttggggaggacgaaatgctggcgcgc
cgggccggcttgcttcatgacattggcaaagcgatcgaccacgaagtggaaggaagccat
gtggaaatcggcgttgagctggcgacgaagtataaagaacatccggtcgtcatcaacagc
atcgcttcccaccatggcgatacggaaccgacgtcggtcatcgctgtgctcgtcgcggcg
gccgatgcgctgtcggcggcgcggccgggagcgcgcagcgaaacgctggaaaactatatc
cgtcgtctagagaagcttgaagaaatcgccgaatcgtacgaaggcgtggaaaaatcgtac
gccattcaagctggacgtgaagtgcgcattatggtcaaaccagatatgatcgacgatttg
gaagcgcaccggctggcgcgtgacatccgcaaacgaatcgaagaagagctcgattacccg
ggccatattaaagtgacggtcatccgcgaaacgcgggcggtcgaatacgcgaaataa
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