Geobacillus sp. GHH01: GHH_c26550
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Entry
GHH_c26550 CDS
T02455
Name
(GenBank) single-stranded-DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
ggh
Geobacillus sp. GHH01
Pathway
ggh03410
Base excision repair
ggh03430
Mismatch repair
ggh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ggh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
GHH_c26550
03430 Mismatch repair
GHH_c26550
03440 Homologous recombination
GHH_c26550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ggh03400
]
GHH_c26550
DNA repair and recombination proteins [BR:
ggh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
GHH_c26550
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
GHH_c26550
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GHH_c26550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ssDNA-exonuc_C
DHH
RecJ_OB
DHHA1
YjeF_N
DUF913
Motif
Other DBs
NCBI-ProteinID:
AGE23166
LinkDB
All DBs
Position
complement(2643512..2645878)
Genome browser
AA seq
788 aa
AA seq
DB search
MLKAKTRWEVERLDEQTVRRLAEEAGVTPLLARLLVRRGVRTASEAAAFLNPLRQPFHDP
FLLDGMERAIQRLKRAIDAGERVLVYGDYDADGVCSTSVMVSALKEAGASVEFYIPNRFT
EGYGPNMAAFRSAKERGVSVIVTVDNGIAAVKEIAAANEWGMDVIVTDHHEPGPVLPEAH
AIIHPKQPGSTYPFRDLAGVGVAFKVAHALLGRVPRHLLDLVAIGTIADLVPLVGENRLF
VAHGLEALRATERIGLRALFRQCRIDAAAINEQTVGFVIAPRLNAAGRLGGADPAVALLM
TDDENEAVQLAAEMDELNRERQQLVAQIAEEAADMVRRQFPPEEHRVLVVAGEGWNAGVV
GIVASKLVEQFYRPAVVLSIDREKGIAKGSARSIHGFDLFASLSQCRDLLPHFGGHPMAA
GMTLALDDVEELRQRLNAIAAETLSEDDFTPPTFIDASCSIAELTLDAARGLERFAPFGV
GNPRPLVLIEGASVETMRRVGANGAHMKAVFSQDGAAIDAIGFGLGPLCEEIAPDARISA
VGELSVNEWNGFAKPQLSLCDLAVSDCQLFDVRGCRDVRPLLERLPKEKRLVVSFRCETG
QRPDVAPFRGELHCVPTEEEAGALSIDDRYVVLLDVPPRLALLSALLGSGRPARIYAVFA
QPEAQFFRTFPTREHFKWFYAFLHQHRSFPLAKRGGELARARGWTEETVHFMAKVFLELD
FISEQNGVISLVHQPAKRDLHESPTYRRRRDELEAEHQLVYSTYEQLKRCLAEMTRSQTH
EEANVSWT
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
atgttgaaagcgaaaacgcgttgggaggtggagcgcctcgatgagcagacggtgaggcgg
ctggctgaggaagccggcgtcacgcccttattggcgaggcttctcgtccgccgcggggtg
cggacggcctcggaggcggcggcgttcctcaatccgcttcgccaaccgtttcatgatccg
tttttgcttgacgggatggagcgagcgattcagcgtctaaagcgggcgattgacgcgggc
gaacgcgtgttggtatacggcgattacgatgccgatggcgtttgcagcacgtcggtgatg
gtgagtgctctcaaggaggcgggggcgtcggtcgagttctacattccgaaccgatttacg
gaaggatacgggccgaacatggcggcgtttcgctccgcaaaagagcgcggcgtttccgtc
attgtgaccgtcgacaatgggattgcggcggtcaaggaaattgcggccgccaacgagtgg
gggatggatgtcatcgtaacggatcaccacgagccaggtccggtgttgccggaggcgcat
gcgatcattcatccgaagcagccgggaagtacatatccgtttcgcgatttagccggcgtc
ggcgttgcgtttaaggtagcccatgccttgcttgggcgggtgccgcgccatttgcttgat
ttggtcgcgatcggcacgatcgctgatttggttccgcttgttggggaaaaccgcctcttt
gttgcacacgggcttgaagcgttgcgagcgacggagcgcatcgggctgcgcgctcttttt
cggcaatgccgcattgatgcggcggccatcaacgaacagacggtcggatttgtcatcgct
ccgcgcttgaacgcggcggggcgcctcggcggcgccgatccggcagtggcgctcttaatg
acggacgatgagaacgaagcggtgcagctggcggcggagatggacgagttaaaccgcgaa
cgtcagcagcttgtggcacaaatcgctgaagaagcggcggacatggtgcgccgccaattt
cctcctgaggaacatcgcgtcttggttgtggcaggcgaaggatggaatgccggagtggtg
ggcattgtcgcttctaagcttgtcgagcagttttaccgcccggcggtcgtgctttccatc
gaccgggaaaaagggatcgccaaagggtcagcccgcagcattcatgggtttgacttattc
gccagcctgtcgcaatgccgcgacctgttgccgcactttggcggccacccgatggcggcg
gggatgacattggcgcttgatgatgtcgaagaattgcggcaacggctgaacgccatcgcc
gccgaaacgttgtctgaggacgattttacgccgccgacgttcatcgatgcttcctgttcg
attgctgagttgacgctcgacgccgcccgcggtcttgagcggttcgctccgtttggcgtc
ggcaatccgcggccgcttgttctcattgaaggggcgtccgttgaaacgatgcggcgcgtc
ggggcgaacggagcccatatgaaagccgtcttttcccaagacggggccgcgatcgatgcc
atcggcttcggcctcgggccgttatgcgaagaaatcgctccggatgcgcgcatttcggcg
gtcggggagctgtcggtgaacgaatggaacgggttcgccaagccgcagctgtcgttgtgt
gatctggcggtcagcgactgccagctgtttgacgtccgcggctgccgcgacgtccgtcca
cttcttgagcggctgccaaaagagaagcggctagtcgtctcctttcgctgcgaaactggg
cagcgccccgacgtggcgccatttcgcggggagcttcattgcgtgccgaccgaagaagag
gcgggcgccttatcgattgacgaccgctatgtcgtgctgcttgacgtgccgccgcggctg
gccttgctgtcggcgcttcttggcagcgggcggccggcgcgcatttacgcggtgttcgcc
cagcccgaggcgcaatttttccgcacgtttccgacgcgcgaacattttaaatggttttac
gcctttttgcatcaacaccgttcgtttccgctcgccaagcgcggcggtgagctggcccgc
gcccgcggttggacggaagagacggttcattttatggcgaaagtatttttagagcttgac
tttatcagcgaacaaaacggcgtcatttcgctcgttcatcagccggcgaagcgcgatttg
cacgaatcgccgacgtaccgccggcggcgggacgagctcgaggcggagcatcagttagtc
tattccacttacgagcaattgaaacgctgtttggcggaaatgacacgttcgcaaacgcac
gaggaggcaaacgtatcatggacttaa
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