Geobacillus sp. GHH01: GHH_c28250
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Entry
GHH_c28250 CDS
T02455
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ggh
Geobacillus sp. GHH01
Pathway
ggh03030
DNA replication
ggh03430
Mismatch repair
ggh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ggh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GHH_c28250 (dnaE)
03430 Mismatch repair
GHH_c28250 (dnaE)
03440 Homologous recombination
GHH_c28250 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ggh03032
]
GHH_c28250 (dnaE)
03400 DNA repair and recombination proteins [BR:
ggh03400
]
GHH_c28250 (dnaE)
Enzymes [BR:
ggh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
GHH_c28250 (dnaE)
DNA replication proteins [BR:
ggh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
GHH_c28250 (dnaE)
DNA repair and recombination proteins [BR:
ggh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
GHH_c28250 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
tRNA_anti_2
HROB
Motif
Other DBs
NCBI-ProteinID:
AGE23336
UniProt:
L8A2S4
LinkDB
All DBs
Position
complement(2820895..2824176)
Genome browser
AA seq
1093 aa
AA seq
DB search
MMFVHLHVLSGYSLFQSAAAVEALAARAKQLSYQALALTDRNVLYGAIPFYRECKQNGIR
PIIGVTADVALSGEEAFPLVLLAANEEGYRHLLEISTMIQMGETKHMEEAALVRLSGGII
AITPGSEGRVESLVAADEWERAKEALGRYHQLFPGRLYVAVQRGEQTRAPYEAGLLQLAE
ETGVPIVATNDVRYVERSDAVAWRCLQAIGRGALLADIEDDNGRYLAGPEEMARRFADLP
EALENSLAIADQCELQIEFGGWRLPAYPVPDGETADSYLRRLSEQGLARRVPSADERYWR
RLSHELDVIQSLHFSDYFLIVADVLAYARRRGILTGPGRGSAAGSLVAYALSITDVDPIK
YGLLFERFLNPERASVPDIDLDFPDDRREEVIRYVADKYGRDRVAQIITFGTFGAKAALR
ETAKALGVPGREAEQVAALLPSKQSVTLRQWHAESAAFRRAVAAVPQGREWLAVAQKLEG
LPRHTSIHAAGVIISPEPLVRFVPLQPSHGEWPLTQYAMGALEALGLLKIDFLGLRTLTL
IEQIVRLIERQTGKPFDIRTLPLDDEKTYALLGAGDTNGIFQLESSGMKRVLAELRPSEF
EDVVAVNALYRPGPMQMIPVYIRRKRGEEPIEYIHPDLAPILAPTYGVLIYQEQIMQIAA
RLAGFSLGQADVLRRAVAKKEKALLAEQRQAFVAGCVANGYPKAVAEELYRHIVRFADYG
FNRSHAVSYALLSYAMAYMKAHYPLCFYAVMLTNASGDREKAAVYYWEAARKGINVLLPS
VNKSGFRSFVEGSAIRLGLAMVKQVGSAAKLIVEERKANGPFADFFDFAARLLPKGLGRP
ALEALISVGAFDEFGADRASLLASIDIAIEHAQWVQALQAGGLSLKPKYAAAHSWPLSER
RRREAEFLGFAVTPHPAAVCRPLLQAAGAVCVADVQGPSTVVGGAVVRIRKTRTKQGEEM
AFFTVGDESGELEAVAFPNVYRRAADVLKEGQFVLLAGTIEVRGGRRQLIIRRAERLLVS
ALYINAGHALSDGPRLAALKQLLEQHHGSIPVYLYDEAKRKLLRLPERYAVDFTAPLVDE
LLSLFGAGRVAVK
NT seq
3282 nt
NT seq
+upstream
nt +downstream
nt
atgatgttcgtccacttgcatgtgttgagcggatacagtttgtttcaaagtgcggcggcg
gtggaggcgcttgcagcgagggcgaaacagctcagctatcaagcgctcgcgcttacggac
cggaatgtgttgtatggcgctattccgttttaccgggaatgcaagcagaacggcattcgc
ccgattatcggcgtgacggctgatgtcgctctttctggggaggaagcgttcccgctcgtg
ctgttggccgccaatgaagaggggtatcgccatttgcttgaaatcagcaccatgatacaa
atgggggaaacaaagcatatggaggaagccgctcttgtgcgcttaagcggcggcatcatc
gccatcactcccggaagcgagggacgcgtcgagtcgcttgtggccgccgacgaatgggag
cgggcgaaagaggcgcttggccgctatcatcagctgtttccaggacggctgtatgtcgcc
gttcagcgcggcgagcaaacgcgagccccatatgaagccgggttgttgcagctggcggag
gaaaccggcgtcccaatcgtggcgacgaacgacgtccgttacgtggagcgcagcgatgcc
gtggcgtggcgttgcttgcaggccatcggccgcggcgcgctgctcgctgacattgaggac
gataacggccgctatttggcggggccagaggagatggcgcgccggtttgcggacttgccg
gaggcgctcgagaacagcctggcgatcgccgatcaatgcgagttgcagatcgagtttggc
ggctggcggctgccggcgtatcccgttccggacggagagacggccgacagttatttgcgc
cgcttatcggaacaagggctcgcccgacgcgtgccgtcggccgatgagcgctactggcgt
cggctttcgcatgagctggatgtgattcagtcgcttcatttcagcgactattttttgatc
gtcgccgatgtgctcgcctacgcccgccggcgcggcatcttaaccggcccgggccgcggt
tcggcggccgggtcgcttgtcgcctacgcattgtcgatcaccgatgtcgatccgatcaag
tatgggcttttgtttgaacggtttttaaatccggagcgggcgtcggtgccggatattgac
ttggattttcctgatgaccggcgcgaagaagtgattcgctatgtggcggataaatacggg
cgcgaccgcgttgcgcaaatcattacgttcggcacgttcggcgccaaagcggcgctgcgc
gagacggccaaagcgcttggcgtccctgggcgggaggcggaacaggttgcggcgctcttg
ccgagcaaacaaagtgtgacgctccgccaatggcatgccgagtccgccgcttttcggcgc
gcggtggcagcggttccgcaagggagagagtggctggctgttgcgcaaaaactggaaggg
ctgccgcgccatacgtcgatccacgctgctggtgtcatcatcagcccggagccgctcgtt
cgcttcgtgccgctgcagccaagccatggcgaatggccgctgacgcaatacgcgatgggg
gcgcttgaagcgcttggattgctgaaaattgattttctcggtttgcgcacgctcacgttg
atcgagcagatcgtgcgtttgatcgagcggcagaccggaaagccgtttgacatccgcacg
ttgccgcttgatgatgaaaaaacgtacgcgctgcttggcgctggagatacaaacggcatt
tttcagctcgaatcaagcgggatgaagcgcgtgctcgccgagctgcggccgtctgagttt
gaagatgtcgtcgccgtcaatgccttgtatcggccggggccgatgcaaatgatccccgtt
tacatccggcgcaagcgcggcgaggagccgattgaatacatccatcctgaccttgcgccg
attttagcgccgacatacggggtattgatctatcaagagcaaattatgcaaatcgccgcc
cggcttgccggattttcgctcggacaagcggacgtgcttcgccgggcggtggcgaaaaaa
gagaaagcgctgcttgctgagcagcgtcaggcgtttgtcgccggctgcgtggcgaacggc
tatccgaaagcagtcgccgaggaactgtaccgacacatcgtccgctttgccgattacggc
ttcaaccgaagccacgcggtcagctatgcgctgttgtcgtatgcgatggcgtatatgaaa
gctcattacccgctttgtttttatgcggtcatgctcaccaatgcttccggcgaccgagaa
aaagcggcggtgtactattgggaggcggcgcgaaaagggatcaacgtccttttgccgtcg
gtcaacaaaagcggttttcgctcttttgtggaggggagcgccattcgccttgggctcgcg
atggtgaagcaagtcggctcggcggcgaagctgattgtcgaggagcggaaagcgaacgga
ccgtttgccgacttctttgatttcgctgctcgcttgctgccaaaagggctcgggcgcccg
gcgctcgaggcgctcatttccgttggggcgtttgacgagttcggtgcagatcgggcttcg
cttcttgccagcattgacattgcgatcgaacatgcgcaatgggttcaggcgctgcaagcc
ggagggctgtcgttaaaaccgaaatatgctgccgcacattcgtggcctttgtccgaacgg
cggcggcgggaagcggagtttcttggcttcgccgtcaccccgcatccggcggcggtgtgc
cgcccgttgctgcaagcggcgggggcggtgtgtgttgccgatgtgcaaggtccgtcaact
gtagtcgggggagcggtcgtccgcatacggaaaacgagaacaaagcagggtgaagaaatg
gcgtttttcaccgtcggcgatgagagcggggaattggaggcggtggcgtttccgaacgtt
taccgccgcgcggcggacgtattgaaagaaggacagtttgtattgcttgccggaacgatt
gaggtgcgcggcggacggcgtcagctcatcattcgccgcgccgagcgcctgctcgtgtca
gcgctgtatattaacgcaggccatgcgctatcggatggaccgcggcttgcggcgttgaag
cagctgctcgaacaacaccacggaagcattccggtttatttatacgacgaagcgaagcgg
aagcttctccgcctgccggaacggtatgcggttgacttcaccgcgccgcttgtcgacgaa
ttgctctctctattcggtgctgggcgcgtcgctgtcaaataa
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