Geobacillus sp. GHH01: GHH_c34860
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Entry
GHH_c34860 CDS
T02455
Symbol
rpoE
Name
(GenBank) DNA-directed RNA polymerase subunit delta
KO
K03048
DNA-directed RNA polymerase subunit delta
Organism
ggh
Geobacillus sp. GHH01
Pathway
ggh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ggh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GHH_c34860 (rpoE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ggh03021
]
GHH_c34860 (rpoE)
03400 DNA repair and recombination proteins [BR:
ggh03400
]
GHH_c34860 (rpoE)
Transcription machinery [BR:
ggh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GHH_c34860 (rpoE)
DNA repair and recombination proteins [BR:
ggh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GHH_c34860 (rpoE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HARE-HTH
DUF7317
Motif
Other DBs
NCBI-ProteinID:
AGE23976
LinkDB
All DBs
Position
complement(3477552..3478109)
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AA seq
185 aa
AA seq
DB search
MSLQQQYSPEELQEMSFVELANLILLDKREALPFDQLVREAAALAGISEEEMEARLAQYY
TDLNIDGRFICVGENVWGLRAWYPFDQTEDETVTIVKPKKKKKALDDEYDEYDELLEDED
LDYDDLDEYDGEELELDEDELLEDEEFDLDEDVAFDDDILGDEEFELDDAPLDEELDLEE
PDEDE
NT seq
558 nt
NT seq
+upstream
nt +downstream
nt
ttgagcctgcagcagcaatactcgccggaggaattgcaggagatgtcgttcgtcgagctg
gcgaacctcattttgcttgacaagcgggaggcgctgccgtttgatcaactcgttcgtgaa
gcagcagcgctggccggcatatcggaagaagagatggaggcgcggctggcccaatattac
accgatttaaacatcgacggccggtttatttgcgttggggaaaacgtctggggattgcgc
gcatggtatccgtttgaccagacagaagacgaaacggtgacgatcgtcaagccgaagaag
aagaaaaaagcgcttgacgatgaatacgatgaatacgatgagttgcttgaagatgaagat
ctcgattacgacgatttggatgaatatgatggggaagagctcgagcttgatgaagacgag
ctcttggaagatgaagaattcgatctggacgaagacgtcgcgtttgacgatgacattctc
ggcgatgaagagtttgagctggacgatgcgccgcttgatgaagagcttgatctcgaagag
ccggacgaagacgaataa
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