Gavialis gangeticus (Gharial): 109286990
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Entry
109286990 CDS
T07453
Symbol
RC3H1
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
ggn
Gavialis gangeticus (Gharial)
Brite
KEGG Orthology (KO) [BR:
ggn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ggn03000
]
109286990 (RC3H1)
04121 Ubiquitin system [BR:
ggn04121
]
109286990 (RC3H1)
Transcription factors [BR:
ggn03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
109286990 (RC3H1)
Ubiquitin system [BR:
ggn04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
109286990 (RC3H1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
Prok-RING_4
zf-CCCH
zf-C3HC4_3
zf-C3HC4
zf-CCCH_UNK
zf-C3HC4_2
zf_CCCH_4
FYVE
zf-CCCH_4
PaaA_PaaC
DUF1236
Vesi_VP2
Baculo_IE-1
zf-RING_4
zf-RING_10
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
109286990
NCBI-ProteinID:
XP_019357404
LinkDB
All DBs
Position
Unknown
AA seq
1138 aa
AA seq
DB search
MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD
IELLPVNSALLQLVGAQVPEQQPITLCSGAEDTKHYEEGKKCVEELALYLKPLSSARGVG
LNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPSPTWEQLENGLVAVRTVVHGLVDYIQNHSKKGTDQQQPPQHSKYKTYMCR
DMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQLNEVGLPSAAILSDE
GAVDLPSRKSSALPNGIVSTGSTVAQLISRGTDSSYDSALKPGKIDHLSSSAPGSPPDLL
ESVPKSSLPALPVNPHPVPTRGPADLPPMSVSKQMQMVPRGSQLYPAQQPDMFYQDPRGA
APPFDPGPYQQGVYYPTQSSQCMPRFVRPPSAPEPGPPYLEHYPAYLPDRVVNSQYTPPQ
QYPPMGQPIYPPHYDSRRVYPPAQPYQREDIVRGSPVPIEIPQTAVPPYVQESRDRYQQM
EGYCPVAPHLGQIRPSCHREPCNRFPSSPQPHPSLDELHRRRKEIMAQLEERKVISPPPF
APSPTLPHTFHPEEYLDEDLKVAGKYKGNDYSQYSPWSCDTIGSYIGTKDAKPKDVVAAG
SVDMANVDNKTIRDQRLDMQRRAAESGDDDLIPFGDRPTVSRFGAISRTSKAMYQSSGPM
QAMAVQGASTKSMNISDYSPYGTHGSWGSSPYLPHQNIPSQGRFSDRERLSMSDISGHGK
TLPSAEREQQLRLELQQLNHQISQQTQLRGLEAASNRLLLQREATTLAGQPQPPPPPSKW
PGMISSEQLSLELHQVEREIGKRTRELSMESQSSLDMKSKLGTSKQTENGQLEPQNKVPA
EDLALTFSSDVPNGSALTQENISLLSNKTTSLSLTEDPEGGGDNHDSQRTGVTPTSAP
NT seq
3417 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtacaagctccacaatggacggattttctctcctgcccaatttgcacacagact
ttcgacgaaacaatccggaaacccatcagtttgggctgcggtcacactgtctgcaagatg
tgcctcaacaagctccaccgtaaggcatgtccctttgaccagaccactatcaatacagat
attgagctccttcctgtgaactcagcattgctgcagctagtgggtgctcaggttcctgaa
cagcagccaattactttgtgcagtggagctgaagacaccaaacattatgaggaaggcaag
aagtgtgtagaagagctagcattgtacctcaaaccactcagcagtgcaagaggtgtaggt
ctgaacagtaccactcagagtgtgttgagtcgtcccatgcaaaggaaacttgtgacatta
gtccactgccaactagtagaagaagaagggcggatcagagccatgcgtgcagcaaggtca
ctgggtgaaagaacagtcacagagctcattcttcaacatcagaatcctcagcaactctct
tccaatctctgggctgcagtgagggctaggggctgccagtttcttggaccagcgatgcaa
gaagaagccctgaagttggtccttctggctctggaagatggatctgctttgtcgcgaaag
gtcttggttctttttgtggtacagagactggagccacgatttcctcaagcttctaaaacc
agtattgggcatgttgtccagctcctttatagagcctcctgcttcaaggttaccaaacgt
gatgaggactcctccctgatgcagttgaaggaggagttccgaacctatgaggctttgcgg
agggaacacgattctcagattgtgcagattgccatggaggcaggtttacggattgcacca
gatcagtggtcctcactgctgtatggagaccagtcccacaaatcccacatgcagtccatc
atcgacaagttgcagaccccggcctcatttgcacagagtgttcaggaactaaccattgct
ctccagcgtactggagacccagccaatctgaaccggcttcgacctcatttagagctcctg
gctaacatcgatcctagtccagatgccccatccccaacttgggaacaactggaaaatgga
ctagttgcagtaaggactgtggtacatggactagttgattacatccagaatcacagcaag
aaaggaacagatcagcaacagcctcctcagcacagcaagtataaaacatacatgtgccga
gacatgaagcaaagaggggggtgtccccgtggggccagctgcacctttgcacactcacaa
gaggagctagaaaaatttcgtaaaatgaacaaacgtctggttcccagaagacccctgagt
gcctccttgggtcagcttaatgaggtgggcctgccttcagcagctatcctctcagatgaa
ggggcagtggacttgcccagtagaaaatcctctgccctgccgaatggaattgtgtcaacg
ggcagcacagtggcgcagcttatctcacgagggaccgactccagctatgattcagctctg
aaaccagggaagatcgatcacctgagcagcagtgcccctggatcccctcctgacttgctg
gagtctgtccctaagagctcacttccagccttaccagtgaacccacaccctgtgcccact
agaggtccagcagacctgcctccgatgtctgtctccaagcagatgcaaatggttccacga
gggtcccagttatatcctgctcagcaaccagatatgttttatcaggatcctagaggagct
gccccaccctttgatccaggaccttatcaacaaggagtgtactatcctactcagtcctcg
cagtgcatgcctcgtttcgtccgacctccatcagctcctgaacctggtcctccttattta
gagcattacccggcttatctcccggaccgcgtggtgaactcccagtacacgccaccacaa
cagtatcctccaatggggcaacccatttacccaccacactatgacagtcgtcgtgtgtat
ccccctgctcaaccataccagcgagaagatattgtcagaggaagccctgtgcccattgaa
attccccagacagctgtgcctccatatgtacaggaatccagggacagatatcagcaaatg
gagggttattgtccagtggctccacatcttggtcagatcagaccttcatgccacagagag
ccttgtaacagatttccatcttcacctcagccccatcctagtctggatgagcttcaccgc
cgacggaaagaaatcatggcccagctagaagagaggaaggtgatctccccacctcccttt
gcaccctcaccaactctgcctcacactttccacccagaggagtacttggatgaagacctg
aaggtagctgggaaatacaaaggaaatgactatagtcagtactctccctggtcatgtgac
accattggctcctacattggaaccaaagatgcaaaacccaaagatgttgtggcagcaggg
agtgtggacatggcgaatgtagataataaaaccattcgtgatcagcggttggacatgcag
agaagagcagcagagtcaggggatgatgatctcatcccatttggagaccggccaactgta
tcgaggtttggggccatctcgcgtacttccaaagcgatgtaccagagttctggccctatg
caggccatggcagttcagggagcttccaccaaatctatgaacatatcagattacagtcca
tatggaactcatggcagttggggaagttctccatatttaccccatcaaaatataccttct
cagggacggttcagtgacagggagaggttatccatgtcagacattagtggtcatgggaaa
actttgccctcagctgagagggagcagcagctcagattggaactgcagcagctaaaccat
cagatcagccagcagacgcaactgagaggactagaggctgctagtaacaggctgctgttg
cagagggaggcgactaccctggcaggccagccacagcccccaccgccaccttctaagtgg
cctggaatgatctcaagtgaacagctgagtttggagcttcatcaggtggagagggaaatt
gggaagagaactcgtgagctgagcatggagagccagtcttcactggatatgaaaagcaaa
ttgggcaccagtaaacagacagaaaatggacagctagagccgcaaaacaaggttccggct
gaagatctggcactgacattcagcagtgatgttccaaatggatcagccttgacacaagag
aatatcagcctcctttcaaacaagaccacatctctgagcctgacagaggacccagagggt
ggaggagacaaccatgactcccagcgaacaggagttacgcccacctctgctccatga
DBGET
integrated database retrieval system
