KEGG   Gavialis gangeticus (Gharial): 109287188
Entry
109287188         CDS       T07453                                 
Symbol
TAF5
Name
(RefSeq) transcription initiation factor TFIID subunit 5
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
ggn  Gavialis gangeticus (Gharial)
Pathway
ggn03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:ggn00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    109287188 (TAF5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ggn03021]
    109287188 (TAF5)
   03036 Chromosome and associated proteins [BR:ggn03036]
    109287188 (TAF5)
Transcription machinery [BR:ggn03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     109287188 (TAF5)
   Coactivators
    SAGA/TFTC/STAGA complex
     109287188 (TAF5)
Chromosome and associated proteins [BR:ggn03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     109287188 (TAF5)
    STAGA complex
     109287188 (TAF5)
    TFTC complex
     109287188 (TAF5)
    SAGA complex
     109287188 (TAF5)
    SLIK complex
     109287188 (TAF5)
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_WDR3_1st Beta-prop_THOC3 WD40_Prp19 TFIID_NTD2 WD40_CDC20-Fz Beta-prop_WDR3_2nd WD40_WDHD1_1st WD40_Gbeta Beta-prop_WDR36-Utp21_2nd Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_EML_2 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_EML WDR55 Beta-prop_WDR36-Utp21_1st NBCH_WD40 WD40_MABP1-WDR62_1st Beta-prop_TEP1_C ANAPC4_WD40 Beta-prop_WDR75_1st Beta-prop_IFT122_1st WDR90_beta-prop_4th Beta-prop_SCAP Beta-prop_Aladin Beta-prop_RIG_2nd Beta-prop_WDR41 Beta-prop_VPS8 Beta-prop_IFT140_1st Beta-prop_Vps41 Beta-prop_EIPR1 WD40_RFWD3 Beta-prop_DCAF4 Beta-prop_HPS5 Beta-prop_WDR19_1st Beta-prop_DCAF12 WD_LRWD1 Beta-prop_SPT8 Beta-prop_Nup120_160 Tricorn_2nd PEP5_VPS11_N CDK5RAP3 RAB3GAP2_N Cytochrom_D1 Beta-prop_ACSF4 eIF2A VID27
Other DBs
NCBI-GeneID: 109287188
NCBI-ProteinID: XP_019357697
LinkDB
Position
Unknown
AA seq 636 aa
MAAVPEEPAEVAVKSEAEDTFQIGGIAVEDQPDVSAVLSAYNQQGDPALYEEYYSGLKHF
IECSLDCHRAELSQLFYPLFVHMYLELVYNQHESEAKSFFEKFHGDQECYYQDDLRVLSS
LTKKEHMKGNETMLDFRTSKFVLRISRDSYQLLKRHLQEKQNNQIWNIVQEHLYIDIFDG
MPRSKQQIDAMVGSLAGEAKREANKAKVFFGLLKEPEIEVPLDDEDEEGENEEGKPKKKK
PKKDSVGSKSKKQDPNAPPQNRIPLPELKDSDKLDKAMNIKEATKRVRLGPDSLPSICFY
TFLNAYQGLTAVDITDDSSMIVGGFADSTVRVWSVTPKKLRSVKTAADLSLIDKESDDVL
ERIMDEKTASELKILYGHSGPVYGTSFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGH
NYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVTCSRFHPNSNYIAT
GSADRTVRLWDVLNGNCVRIFTGHKGPIHSLAFSPNGRFLATGATDGRVLLWDIGHGLMV
GELKGHTDTIYALRFSRDGEILASGSMDNTVKLWDAVKAFEDLETDDFTTATGHINLPEN
SQDLLLGTYMSKSTPVIHLHFTRRNLLLAAGAYSPQ
NT seq 1911 nt   +upstreamnt  +downstreamnt
atggcggccgtgcctgaggagccggcggaggtggcggtgaagtcggaggccgaggacact
ttccagattggaggtattgctgtagaagatcagccagatgtgagcgcagtgttgtctgcc
tacaatcagcagggagacccagcactgtatgaggaatactacagcggactgaaacacttc
attgagtgctccctagactgtcaccgggccgaattatcgcagttgttttatccgcttttt
gtgcacatgtatttggaattggtctacaatcaacatgagagtgaagcaaagtctttcttt
gagaagtttcatggagatcaggagtgttattaccaagatgacctgcgtgtattatccagc
ttaaccaaaaaggaacacatgaaagggaatgaaaccatgctggatttccgaacaagcaaa
tttgtgctgcgcatttcccgtgactcttaccagctcttgaagagacacttgcaggaaaag
cagaacaatcagatctggaacattgttcaggagcatctctacattgacatctttgatgga
atgccccgcagcaaacagcagatagatgctatggtgggaagcttggctggagaggcaaaa
cgagaggcaaataaagcaaaggttttctttggcttattaaaagagccagaaattgaagtc
cctttggatgatgaagatgaagaaggggagaatgaggaaggaaaaccaaaaaagaaaaaa
ccgaaaaaagatagtgtgggatcaaaaagtaaaaaacaagacccgaatgctcctccacag
aacagaattcctcttcctgaactgaaagactctgacaagctggataaagcaatgaacata
aaggaagccacaaagcgtgtgcgtcttggcccagacagcttgccttctatctgtttctac
acattccttaatgcttaccagggtcttactgcagtggatatcacagatgactctagcatg
attgtaggaggctttgctgactccactgtcagagtgtggtctgtgacaccaaaaaagcta
cgcagtgtaaaaacagcagcagatctcagtctcatagacaaagaatcagatgatgtcttg
gaaaggatcatggatgagaagacagcaagtgagctgaagattttatatggtcacagtgga
cccgtctatggcaccagcttcagtcctgataggaactacctgttatcctcctcagaagat
ggcactgtgcgattgtggagtctgcaaacatttacttgcctggtgggatataaaggacac
aactatccagtatgggatacacagttctctccgtatgggtattactttgtatctggtgga
catgacagagtggctcggctctgggcaacggatcactatcagcctttgcgtatatttgct
ggccaccttgctgatgtcacatgtagtcggtttcatcccaactccaactatattgctacg
ggctcagcagacagaactgtgcgactctgggatgttctgaatgggaactgtgtgaggatc
ttcactggacataagggaccaattcattcgctggcattttcccctaatggaagattcctg
gccactggagcaacagatggaagagtgctcctctgggatattggccatggtttgatggtg
ggagagttgaaagggcacactgacaccatctatgcactcagattcagtagagatggggag
attttagcatcaggttctatggataacacagtcaaactgtgggacgctgtgaaagcattt
gaagacttggaaactgatgattttacaacagccacaggacacataaatctgcctgaaaac
tcacaggacttgctactgggtacttacatgagcaaatcaaccccagtcatacaccttcat
tttacacggagaaacttgctgctggctgctggagcgtacagcccacaataa

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