KEGG   Gavialis gangeticus (Gharial): 109287535
Entry
109287535         CDS       T07453                                 
Symbol
EXOSC1
Name
(RefSeq) exosome complex component CSL4
  KO
K07573  exosome complex component CSL4
Organism
ggn  Gavialis gangeticus (Gharial)
Pathway
ggn03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ggn00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    109287535 (EXOSC1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ggn03019]
    109287535 (EXOSC1)
Messenger RNA biogenesis [BR:ggn03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     109287535 (EXOSC1)
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     109287535 (EXOSC1)
SSDB
Motif
Pfam: EXOSC1 ECR1_N RRP4_S1
Other DBs
NCBI-GeneID: 109287535
NCBI-ProteinID: XP_019358236
LinkDB
Position
Unknown
AA seq 195 aa
MAPPVRYCVPGERLCSLDEAAAGSGTYTRRGHVHAALAGALLARDLGGPLPVVSVVRDAE
AQLLPDVGAIVTCKVCSINSRFAKVHILYVGSTPLKSAFRGTIRREDIRATERDKVEVYK
SFRPGDIVLAKVISLGDAQSNYLLSTAENELGVVVAHGEAGVRLVPISWCEMQCPRTHTK
EFRKVARVQPQFLQT
NT seq 588 nt   +upstreamnt  +downstreamnt
atggcgccgcctgtgcgctactgtgtacccggggagcggctctgcagcttggatgaggcg
gccgcgggcagtggtacctacacccggcgcgggcacgtgcacgccgcactggccggggct
ctcctcgcccgcgacctcggcggcccgctgcctgtggtgtctgtggtgcgagatgccgaa
gcccagctcctgcccgacgtgggcgccatcgttacctgcaaggtgtgcagtattaactcc
cgcttcgccaaggtgcacatcctgtatgtcggctccacgcccctcaagtcagctttccgc
ggcaccatccggagggaagacatccgagccacggagcgggacaaggtggaggtttacaag
agtttccgcccaggggacattgtcctggctaaggtgatttcgctgggggatgcgcagtcc
aactacctgctgagcacggctgaaaatgagctgggtgtggtggtggcccatggcgaggca
ggggtgcggctggtgcccatcagctggtgtgagatgcagtgtccccggacgcataccaag
gagttccgcaaagtggcccgtgtgcagccccagttcctgcagacctag

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