Gavialis gangeticus (Gharial): 109287535
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Entry
109287535 CDS
T07453
Symbol
EXOSC1
Name
(RefSeq) exosome complex component CSL4
KO
K07573
exosome complex component CSL4
Organism
ggn
Gavialis gangeticus (Gharial)
Pathway
ggn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ggn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109287535 (EXOSC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ggn03019
]
109287535 (EXOSC1)
Messenger RNA biogenesis [BR:
ggn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
109287535 (EXOSC1)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
109287535 (EXOSC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
RRP4_S1
Motif
Other DBs
NCBI-GeneID:
109287535
NCBI-ProteinID:
XP_019358236
LinkDB
All DBs
Position
Unknown
AA seq
195 aa
AA seq
DB search
MAPPVRYCVPGERLCSLDEAAAGSGTYTRRGHVHAALAGALLARDLGGPLPVVSVVRDAE
AQLLPDVGAIVTCKVCSINSRFAKVHILYVGSTPLKSAFRGTIRREDIRATERDKVEVYK
SFRPGDIVLAKVISLGDAQSNYLLSTAENELGVVVAHGEAGVRLVPISWCEMQCPRTHTK
EFRKVARVQPQFLQT
NT seq
588 nt
NT seq
+upstream
nt +downstream
nt
atggcgccgcctgtgcgctactgtgtacccggggagcggctctgcagcttggatgaggcg
gccgcgggcagtggtacctacacccggcgcgggcacgtgcacgccgcactggccggggct
ctcctcgcccgcgacctcggcggcccgctgcctgtggtgtctgtggtgcgagatgccgaa
gcccagctcctgcccgacgtgggcgccatcgttacctgcaaggtgtgcagtattaactcc
cgcttcgccaaggtgcacatcctgtatgtcggctccacgcccctcaagtcagctttccgc
ggcaccatccggagggaagacatccgagccacggagcgggacaaggtggaggtttacaag
agtttccgcccaggggacattgtcctggctaaggtgatttcgctgggggatgcgcagtcc
aactacctgctgagcacggctgaaaatgagctgggtgtggtggtggcccatggcgaggca
ggggtgcggctggtgcccatcagctggtgtgagatgcagtgtccccggacgcataccaag
gagttccgcaaagtggcccgtgtgcagccccagttcctgcagacctag
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