Gavialis gangeticus (Gharial): 109288277
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Entry
109288277 CDS
T07453
Symbol
VPS8
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog isoform X1
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
ggn
Gavialis gangeticus (Gharial)
Pathway
ggn04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
ggn00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
109288277 (VPS8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ggn04131
]
109288277 (VPS8)
Membrane trafficking [BR:
ggn04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
109288277 (VPS8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
zf_RING_Vps8
VPS8_N
Beta-prop_WDR36-Utp21_1st
zf-RING_Vps41
TPR_VPS8_2
WD40_CDC20-Fz
TPR_Vps41
Clathrin
zf-RING_11
zf_RING_Vps8_fungal
zf-RING_2
Beta-prop_WDR5
Beta-prop_HPS5
zf-RING_UBOX
WDR55
Beta-prop_WDR3_1st
ANAPC4_WD40
Motif
Other DBs
NCBI-GeneID:
109288277
NCBI-ProteinID:
XP_019359332
LinkDB
All DBs
Position
Unknown
AA seq
1416 aa
AA seq
DB search
MEKMADELKTETENLNPEHSMSSTGLEDDLGKLLGQETLLPKLGSVDVERELDAKSELID
DKEFNIPQVDTPPTLESILNETDDEEETFVLEDPSLLNIDNIDTHSYDTSSVASSDSGDR
AHMKRKKRLPDSFSLHGSVIRLSLLKGISAQIVSAADKVDAGLPTAIAASNLIAVGTSHG
LALIFGKDQNQALRLCLGSTAVGAQYGAISALSINNDCSRLLCGFAKGQITMWDLASGKL
LRSITDAHPPGTAILHIKFTDDPTLAICNDSGGSVFELSFKRVMGVRTCESRCLFSGSKG
EVCCIEPLHAKTELRDHPITQYSLLAMASLTKILVIGLKPSLKVWMTFPYGRMDPSSVPL
LAWHFVAVQNSVNPILAFCRGDVVHFLLVKRDDSGAIHVTKQKQLHLHYDLINFTWMNSR
TVVLLDSVEKLHVIDRQTQEELETIEISEVQLVYNSSHFKSLATGGNVSQALALVGEKAC
YQSISSCGSQIFYLGTKSVHVMTLRSWRERVDHLLKQDCLTEALALAWSFYEGKAKAVVG
LSGDVGKRKAVIADRMVEILLHYTDRTLKKCPDQGKIQVMEQHFQDMVPVIVEYCLLLQR
TDLLFSQVYDKMSENSVAKGIFLECLEPYILSGKLMGMTAQVMKDLLLHFQDRNLLENME
ACIVHMDITSLDIQQVVLLCWENHLYDAMIYVYNSGMNDFLSPMERLFKVIAPPLNAGKS
LTDEQVVMGNKLLVYISCCLAGRAYPLGDIPEDLVPLVKNQIFEFLIRLHSAEASTDEEV
YPYVRTLLHFDTREFLNVLALTFEDFKNDKQAVEYQQRIVDILLKVMVENSDFTPSQVGC
LFTFLARQLAKPNNTLFVNRTLFDQVLEFLCSPDDDSRHSERQQVLLELLQAGGIVQFEE
NRLIQMAEKAEFYQICEFMYEREHHYDRIIDCYLCDPVRKEDVFNYIHNILSIPGYSTEE
KHSVWQKALEHMEELLLLSPGKAADLITTHFNDQLEGIINNLQDQFLLFQFLRSLLDPRE
GINQDLIHVSPCITEQFIELLCHYSPDQVLEMLQVLEFYRLEETIQITQKHQLHEASSYL
LEKKGDVHGAFLVMLEQLQSKLMVLTQEDENSTQSHSIKDIEATLLKTIALCQRNSHNLN
QQQREALWFPLLEAMMSPQKLSSSSASCRHSEHLKILTMQVLNNMAAFIALPSILQRILQ
DPVYGKGKLGEIQGLVLGMLDTFNYEQTLLETTTNLLNHDLHWSLCNLRASVTRGLTPKQ
DYCCICLQQYKRRQETADEIIVFSCGHLYHSLCLLSKECGLQTQGLMRWTCYKCNSSSKG
GKLCESFSELKKGTSASLAQASSESALDPQQIQAFDQLCRLYRGTSRLALLTELSRSRGG
ERPGPLSISQGDSALSSVFQNENFQLHLAPPPFTEE
NT seq
4251 nt
NT seq
+upstream
nt +downstream
nt
atggaaaagatggcagatgaattgaagacagagactgaaaacctcaatccagaacacagc
atgtcttccacaggactggaagatgaccttgggaagctcttgggtcaggagacacttctc
ccaaagttgggcagtgttgatgtggaaagagaactagatgccaaaagtgagctgattgat
gataaagagttcaatattcctcaagtggataccccaccgacactggaaagcatattgaat
gagactgatgatgaagaagagacttttgtgctggaggatccctcgctcttgaacatagat
aatatcgacacacactcttacgacacgtcttcagtggcgagctccgacagtggagaccgg
gcacacatgaaaagaaagaaaaggctccctgattctttttctctccatggatcagtcata
cgactttcacttctgaaaggaatttctgcccaaatagtttctgctgcagacaaagtggat
gctggcttacctactgccatagcagcatcaaatctgattgctgtggggacttctcatgga
ttggcattaattttcggaaaagatcagaaccaggctcttcggctttgtcttggcagcacg
gctgttggtgcccagtacggggctatctcagctctcagtatcaataacgactgctcgaga
cttctgtgcggctttgcaaaaggacagattactatgtgggatctggctagtgggaaactt
ctgagatcaataacagatgctcatcccccaggaacagccattttgcacatcaagttcaca
gatgacccgacccttgcgatttgcaatgacagtggaggctccgtcttcgaactgtcattt
aagagagtgatgggagtgagaacctgcgagtctcgatgtctgttcagcggatccaagggg
gaagtttgctgtattgagcctttgcatgcgaagacagaactgagagatcatcctattacc
cagtactccctgctagcaatggcctccttgactaagatccttgtcattgggttgaagcca
tctctgaaagtgtggatgacttttccatatggtcgtatggatccctccagcgttcctttg
ctggcgtggcactttgttgctgtacagaactcagtaaaccccatacttgccttctgtcgt
ggagatgtggttcattttcttttggtaaagagagatgattcgggtgcaatacatgttact
aagcagaagcagctgcatctgcattacgacctcatcaattttacttggatgaattcgcgc
acggtggtgcttctggatagcgtggagaagctccatgtgatagatcgccagacgcaagag
gagttggaaaccatagagatttcagaggttcagctagtctacaacagcagccacttcaaa
tcactggccacagggggcaatgtcagccaggctctggcactggttggggaaaaagcctgc
tatcagtccatcagcagctgtggcagtcagatcttctaccttggtacaaagtccgttcat
gtgatgacattaaggagctggagagagagagtggatcaccttctgaaacaagactgtctt
actgaggccctggctctagcttggtctttttatgaaggtaaagcaaaggctgttgtaggg
ttgtctggagatgtcggcaagcgaaaggcagtcattgcagacagaatggttgaaatcctt
ctccattacactgatcgaactttgaagaagtgtcccgaccagggaaaaatccaagtgatg
gaacaacactttcaggacatggtgcccgtcatagtcgagtactgcctcttacttcagcgc
acggatcttttattcagccaggtgtatgacaagatgagtgagaattctgtggccaaaggg
atcttcctggagtgcctggagccatacattttaagtggcaagctgatgggaatgacagct
caagtgatgaaagacttgctgcttcacttccaagataggaacctgttggagaacatggag
gcctgcattgtgcacatggatatcaccagccttgacatacagcaggtggttcttctttgc
tgggaaaatcatctctatgatgccatgatctatgtctataacagtggaatgaacgacttc
cttagtccaatggagaggttgttcaaagtcatcgctcctccactgaatgctgggaagtct
ctcacagatgagcaggttgtgatgggcaacaagcttctagtctatataagctgctgtttg
gcaggtcgtgcttacccgttgggtgatattcctgaagatctggttcccttggttaaaaac
cagatctttgaatttcttatccgcctccactcggctgaggcatccactgatgaagaagtt
tatccctatgttcgtacgctgctgcactttgacacccgggagttccttaatgtccttgca
ctgacttttgaagatttcaagaatgacaagcaagcagtggagtatcaacagagaatcgtg
gacatcctgctaaaagtcatggtggaaaattctgacttcaccccatcgcaggttgggtgt
ctctttaccttccttgctcggcagctcgccaagcccaacaacacgttgtttgtgaacagg
acactttttgatcaggtccttgaatttctgtgcagtcctgatgatgattcccgacactct
gagagacagcaggtcctgttagaactgctgcaggctgggggaatagtacagtttgaagag
aaccgtctcatccaaatggcagaaaaagctgaattctaccaaatttgtgagtttatgtat
gaacgggagcatcactatgaccgaattattgattgttacctgtgtgatccagtgagaaag
gaagacgttttcaactacatccacaatattttgtccattcctggatacagcacagaggag
aagcattcagtgtggcagaaagctctggaacatatggaggagctgcttttgctgagccct
ggcaaagctgcagacctgatcaccactcacttcaatgatcagcttgaggggatcattaac
aaccttcaggaccagttcttgcttttccagtttttgaggagtcttcttgacccaagggaa
ggaatcaatcaggatctgatccacgtttctccctgcatcactgagcagttcattgagttg
ctgtgtcactacagtcctgaccaggttttagagatgctacaagtcctggagttctacaga
ctggaggagaccattcagatcactcagaaacaccaactccatgaagcttcctcatacctc
ttggaaaagaaaggagatgtccatggtgctttcttggtaatgcttgagcaactgcaaagc
aagctgatggtgcttacacaggaagatgaaaattcaacacagtcccattcaataaaggat
attgaagctaccttactgaaaacaattgcactttgccagaggaattcacataatttaaac
cagcagcagcgagaggctctctggtttcccctcctggaggctatgatgtcaccacagaaa
ctgtcaagttcttcagcctcatgccgacattctgaacatctgaagattttgaccatgcag
gtgctcaacaacatggctgcttttattgcccttccctcaatcctgcagagaattctacag
gatcctgtttatggtaaaggaaaacttggagaaattcaaggacttgtactggggatgctg
gatacgtttaactatgagcagacccttctagagactaccactaacctcctaaaccatgat
ctccactggtccctttgcaacctgagagcctctgtcaccagagggctgaccccaaaacag
gattattgttgcatctgtctgcagcaatacaagagaaggcaagagaccgctgatgaaatc
attgtcttcagctgtggccatctctaccactccctctgcctgctgagcaaagagtgtggc
ctgcaaacccaagggctgatgagatggacatgctacaaatgtaactccagtagcaaaggg
gggaagctatgtgagagcttctcagagttgaaaaaaggaaccagcgcatctctggctcag
gcaagttcagagtctgcattggatccccaacaaatccaggcctttgatcaactctgccga
ctttaccgaggaacctccaggttggctctcctgacagagctgtcccggagtcgtggtggg
gaaaggcccgggccactcagcatctcgcaaggcgactctgccctgagcagcgttttccag
aatgagaatttccagctgcaccttgctccccctccgttcacagaggagtag
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integrated database retrieval system
