Gavialis gangeticus (Gharial): 109289187
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Entry
109289187 CDS
T07453
Symbol
CASC3
Name
(RefSeq) protein CASC3
KO
K14323
protein CASC3
Organism
ggn
Gavialis gangeticus (Gharial)
Pathway
ggn03013
Nucleocytoplasmic transport
ggn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ggn00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
109289187 (CASC3)
03015 mRNA surveillance pathway
109289187 (CASC3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ggn03019
]
109289187 (CASC3)
Messenger RNA biogenesis [BR:
ggn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
109289187 (CASC3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
109289187
NCBI-ProteinID:
XP_019360698
LinkDB
All DBs
Position
Unknown
AA seq
652 aa
AA seq
DB search
MNMYLENIQINSLLQNRVESEDGIEGDAVLSDYESAEDSEAEEEDYSEEESSKVELKQDG
NDSSESTAKAEKGEEKPDSKGTVTGERQSGDGQESTEPIENKVGKKVPKHLDDDEDRKNP
AYIPRKGLFFEHDLRGQTQEEEVRPKGRQRKLWKDEGRWEHDKFREDEQAPKSRQELIAL
YGYDIRSAHNPDDIKPRRMRKPRFGSPPQREPNWSHERQNKPPRYQGSDNTPAPPRTFIS
RSSAGTGRMPPPRTYPRAGGYKENRPSYRAAEANGQHHSRNSEQAKHESSYRSKRVEQAP
ARDPSPEAEVATVHNSPVKKEEIVLESQTTTTDAVQPPPDRPIEKKSYSRARRTRNKVGE
TGKLADEVPPPEGPMPVSPKPVQVETSPPPAKTGSWETPVESNMDGLEQEMTQLNLTEQN
WTPGQPQFIQPRELRSIPNHMHMGTGPPPQFNRMEEMAVQGSRAKRYSSQRQRPPVPEPA
PPMHISIMEGHYYDPLQFQGPIYTHSENPAPLPPQGMIVQPEMHLPHPGLHPHQTPAPMG
NPGLYPPPVSMPPGQPPPQQLLAPTYFSPPGVMNFGNPSYPYPPGALPPPPPPHLYPNTQ
AQSQVYGGVTYYNTVQQQVQPKPSPPRRTSQPVTIKPPPPELLVAGCKQGSS
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgaatatgtacctggaaaatattcagattaatagtttgctccagaacagagtggaaagt
gaagacggcatcgaaggagatgctgttctctcagactatgaaagtgcagaggactcggag
gctgaggaagaggattacagtgaggaggaaagctcgaaagtggaactgaagcaggacggc
aatgattctagtgagtccactgcaaaagcagagaaaggggaagagaaacccgattccaaa
ggcactgtgactggcgagagacaaagcggggatgggcaggagagcactgaaccgattgag
aataaagttgggaaaaaggtccccaagcacctggatgatgatgaggatcggaagaatcca
gcttacatccctcgcaaagggctgttctttgagcatgatctccgaggacagacccaggaa
gaggaagtgaggcctaaaggtcgccagagaaaattatggaaagatgagggccgctgggaa
catgataaattccgggaagatgagcaagctccgaagagcaggcaggagctaatagctctc
tacggctatgacatcaggtctgctcacaacccagatgacatcaagccaaggaggatgcgc
aagccgaggtttgggagccctccacagcgagagccaaattggtcccacgagaggcaaaac
aagcctccaaggtaccagggctccgacaataccccagcaccaccacgaacattcatcagc
cggagttctgcgggtacagggaggatgcccccacccaggacctatccaagggcaggtggc
tacaaagagaatcgccctagctatcgagctgcagaagcaaatggccagcatcactctcga
aacagtgagcaggctaaacatgaaagcagctaccggtcaaagcgtgtggaacaagcccca
gcaagagacccttcacccgaggctgaggttgcaactgtccacaacagccctgttaagaag
gaggagattgttttggaaagccagaccacaacaacagatgctgtccagccacccccagat
agacccattgaaaagaagtcttattctcgggcaaggagaaccaggaataaagttggagag
acaggaaagctggctgatgaagtgccacccccagaggggccgatgcctgtgtctccaaaa
cccgtgcaggtagagacatccccaccaccagcaaagaccggaagctgggagaccccagta
gaatccaacatggatggacttgaacaagaaatgacacagttgaatctaactgagcagaac
tggaccccagggcagcctcagtttatacaacctcgggaacttaggagtattcctaatcat
atgcacatggggactggaccaccacctcagtttaacaggatggaggaaatggcagtgcag
gggagtcgtgcaaaacgttattcatcccagcgtcagagacccccagttccagagcctgca
ccccccatgcacatcagcattatggaagggcactattatgatccactacaattccaggga
ccaatctatacccacagcgagaaccctgccccgttgcccccccagggcatgattgtacag
cctgaaatgcatctcccccatccaggtttacatccacatcagacgccagcacctatgggg
aaccctggtttataccctccacctgtctccatgcctcctgggcaacccccaccacagcag
ctacttgcacccacctatttctcccctcctggggtcatgaattttgggaatcctagctac
ccctaccccccaggagcgctcccgccaccacctcctccccatctgtatcccaacacccag
gcccagtcccaagtatatggaggggttacctactacaacactgtccagcagcaggtacag
ccaaaaccttctccaccgcgaagaacatcacagcctgtgaccatcaagcccccaccccct
gagcttctcgttgcaggttgtaagcagggctccagttaa
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