Gavialis gangeticus (Gharial): 109289668
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Entry
109289668 CDS
T07453
Symbol
SF3B3
Name
(RefSeq) splicing factor 3B subunit 3 isoform X1
KO
K12830
splicing factor 3B subunit 3
Organism
ggn
Gavialis gangeticus (Gharial)
Pathway
ggn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ggn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109289668 (SF3B3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ggn03021
]
109289668 (SF3B3)
03041 Spliceosome [BR:
ggn03041
]
109289668 (SF3B3)
03036 Chromosome and associated proteins [BR:
ggn03036
]
109289668 (SF3B3)
Transcription machinery [BR:
ggn03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
109289668 (SF3B3)
Spliceosome [BR:
ggn03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
109289668 (SF3B3)
Complex B
109289668 (SF3B3)
Complex C
U2 SnRNP specific factors
109289668 (SF3B3)
Chromosome and associated proteins [BR:
ggn03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
109289668 (SF3B3)
TFTC complex
109289668 (SF3B3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
Motif
Other DBs
NCBI-GeneID:
109289668
NCBI-ProteinID:
XP_019361359
LinkDB
All DBs
Position
Unknown
AA seq
1217 aa
AA seq
DB search
MFLYNLTLQRATGISYAIHGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFG
VIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYQPSKNVFEKIHQETFGKSGCRRIVPGQY
LAVDPKGRAVMISAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP
MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEPLEEHGNFLITVPG
GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKITLETDEDMVTEIRLKYFDTVPVAAAMCVLKTGFLFVASEFGNHYLYQ
IAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDELDSLSPILCCQIADLANEDT
PQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHVEDEFDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIRADKRVNEWKTPG
KKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGEQ
RSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGTEKQDELGERGSI
GFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSW
LSYSYQSRFHLTPLSYETLEFASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVAFP
LQYTPRKFVIHPESNNLIIIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERELAAEMAA
SFLNENLPESIFGAPKAGNGQWASVIRVMNPIQGNTLDLVQLEQNEAAFSVAVCRFTNTG
DDWYVLVGVAKDLILNPRSVAGGFVYTYKLVNSGEKLEFLHKTPAEEVPAAIAPFQGRVL
IGVGKLLRVYDLGKKKLLRKCENKHIANYICGIQTIGHRVIVSDVQESFIWVRYKRNENQ
LIIFADDTYPRWVTTATLLDYDTVAGADKFGNICVVRLPPNTNDEVDEDPTGNKALWDRG
LLNGASQKAEVIMNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDF
FQHVEMHLRSEHPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMEPNKQKNVAEELDRT
PPEVSKKLEDIRTRYAF
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgtttctttacaacttaaccttgcagcgagccactggcatcagctatgccatccatggt
aacttttcaggaacaaaacagcaggaaattgttgtttcacgggggaagatcctggaattg
ctccgccctgatcctaatacagggaaggttcataccttgctgactgtggaagtatttgga
gtcattcgttccctcatggccttcaggctgacaggtggaaccaaagactacattgtggtt
ggcagtgattcagggcgcattgttatcctagaataccaaccctccaagaatgtgtttgaa
aagattcatcaggaaacctttggcaagagtggctgtcgcagaattgttcctggtcaatac
ttagctgtggatcccaagggtcgtgctgttatgattagtgccattgagaaacagaaactg
gtgtatattttgaacagagatgctgctgcccgtctcaccatttcttccccactggaggct
cacaaagccaacacattggtttaccatgtggtgggagtcgatgtaggatttgaaaaccca
atgtttgcttgtctggaaatggactatgaggaagcagacaatgatccaactggagaagca
gcagctaacactcagcagacgctgacattttatgagttagatctgggtttaaaccatgta
gtgaggaaatacagtgaacctttggaggagcatggcaatttcctcataacagttcctggt
ggttccgatggccccagcggtgtgctgatctgttctgaaaactacatcacctacaaaaac
tttggtgaccaacctgatatcagatgtcccattcccaggagaaggaatgacttggatgac
ccagagagaggcatgatttttgtctgctctgctacacacaaaaccaagtccatgttcttc
ttcctggcccagacagagcaaggcgacatcttcaaaatcacccttgagactgatgaagac
atggtaacagagatccgactgaagtattttgatactgttcctgtggctgctgccatgtgt
gtgttgaaaacaggatttctctttgtggcatctgaatttggaaaccattacctgtaccaa
atagcccatctgggtgatgatgatgaggagccagagttctcctctgccatgccccttgag
gaaggagacactttctttttccagccacggcctctcaagaacctggtgctggtggatgag
ctggacagcttgtctcctatcttgtgttgtcagatagctgatctggccaatgaagacaca
ccccagttgtatgtggcctgtggtcggggacctcggtcatctctgagggttctaaggcat
ggactcgaggtatctgaaatggccgtttcagagctgcctggtaaccccaatgctgtctgg
actgtgaggagacatgttgaagatgagtttgacgcctacattattgtgtccttcgtaaat
gccaccctggtgttgtctatcggagagactgtagaggaagtgactgactctggattcctt
ggtaccacccccactttatcctgctccttactcggggatgatgcattggtacaggtttac
ccagatggcatccggcacatccgagcagataaaagagtgaatgaatggaagacaccagga
aagaaaaccattgtaaaatgtgctgtgaaccagagacaagtggtaatagcattgactgga
ggagaactggtctattttgagatggatccgtcaggacagctgaatgagtacacagagagg
aaggagatgtcagcagatgttgtgtgcatgagtttggccaatgttccccctggggagcag
cgctcccgcttccttgctgttgggctggtggacaacactgtcagaatcatttcccttgat
ccttcggattgcttacagccactgagcatgcaggccctccctgcacagccagaatcactg
tgtattgtggagatgggaggtacagaaaaacaggatgagctgggtgagagaggctctatt
ggcttcctgtacttgaatatcggattacagaacggtgtactattgcgaactgtcttggat
ccagtcactggggatctttctgataccagaactaggtaccttggctcacgccctgtgaaa
ctctttagagtccggatgcaaggccaagaggcggtgttggccatgtcgagtcgctcatgg
ctgagttattcctatcagtcccgttttcatctgacccccctatcttatgagacactggaa
tttgcatctggctttgcttccgagcagtgtccagagggcattgttgcgatctccacaaat
acgctgaggattttggcactggagaagctgggtgcagttttcaaccaggttgccttccca
ttgcagtatacacccagaaaatttgttattcaccctgagagcaacaacctgatcatcatt
gagacagaccacaatgcttacacagaagctactaaggcccaaaggaagcagcaaatggct
gaggaaatggtggaggcagctggcgaagatgagagggaactggctgcggagatggcagcc
tcctttctgaacgaaaaccttccagaatccatctttggtgctcccaaggcaggcaatggg
cagtgggcttctgttatccgagttatgaaccccatccagggaaatactttggacctagtc
cagctggagcagaatgaagctgccttcagtgtggctgtgtgccgattcaccaacacgggt
gatgactggtatgtgctcgtaggagtagccaaggacctgattctgaacccccgctctgtt
gctggtgggtttgtctacacatacaagctggtgaatagtggtgagaagcttgaattcctg
cacaagacccctgcagaggaggtacctgcagccattgccccattccaaggccgagtccta
attggagttggaaaacttttacgtgtgtacgacttgggcaagaagaagctgcttcggaag
tgtgaaaataagcacattgccaactatatctgtggcatccaaaccattggacaccgagtg
attgtttcagacgtccaggagagcttcatctgggtgcgctacaaaaggaatgagaaccag
ctcatcatttttgcagatgacacctacccccgctgggtgactacagccaccctccttgat
tacgacactgtggccggagcagacaagtttggcaacatctgtgtggtgaggcttcctccc
aacactaatgacgaggtagatgaagatccaactgggaacaaggcactgtgggaccgaggc
cttcttaatggagcatcacagaaggctgaagtgataatgaattaccatgtgggggagact
gtgctttctttacagaagaccacgctgatcccaggaggttctgaatctcttgtgtatacc
accttgtcagggggcattgggatcctggtccccttcacatcccatgaggatcatgacttc
ttccagcacgtagaaatgcatctgaggtcagagcaccctcctctctgtggacgagaccat
ctcagtttccggtcctactactttccagtgaagaatgtgattgatggggacctctgtgaa
cagttcaactccatggagcccaacaaacagaagaacgtggctgaagaactggacaggacc
ccaccagaggtgtccaagaagctggaggatatccgtacgcgctatgcgttctga
DBGET
integrated database retrieval system
