Gavialis gangeticus (Gharial): 109289689
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Entry
109289689 CDS
T07453
Symbol
EDC4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
ggn
Gavialis gangeticus (Gharial)
Pathway
ggn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ggn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109289689 (EDC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ggn03019
]
109289689 (EDC4)
Messenger RNA biogenesis [BR:
ggn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109289689 (EDC4)
mRNA degradation factors
5'-3' decay
Decapping complex
109289689 (EDC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EDC4L
WD40_Prp19
Beta-prop_HPS5
Beta-prop_TEP1_2nd
WDR55
Uteroglobin
PIN_8
ApoLp-III
Motif
Other DBs
NCBI-GeneID:
109289689
NCBI-ProteinID:
XP_019361412
LinkDB
All DBs
Position
Unknown
AA seq
1403 aa
AA seq
DB search
MASASIDIEDATQHLRDILKLDRPGGSVNENQRPSNSYNGDLNGLLVPDPITAGDGASLA
KPMHRSVPLGTLQEKQVICLSGDDGSTCLVISAKDVEIVASSDSSITSKARGSNKVKIQP
VARYDWEQKYYYGNLIAVSNSYLAYAIRGATNGSAMVRVLSVSTAERTLLKGFTGGVADL
AFAHLNSNQLACLDEAGNLFVWRLAMVNGKIQEEILVNIKRPDGTPLNNFRRIIWCPFIP
DENEESSEEGSQILALLHEDRAEVWDLDIIRANDSSWPVEVTNIKEGFIVVKGHSTRLSE
GALSPDGTVLATASHDGYVKFWQIYIEGQDEPRCLHEWKPHDGKPLSCLLFCDNHKKQDP
EVPFWRFLITGADQNRELKMWCTVSWTCLQTVRFSSDIFSSVNILPSLKVCLDLSAEYLI
LSDVQRKVLYVMELMQNQEEGKAYFSSISEFLLTHPVLSFGIQAVSRCRLRHTEVLPAEE
ENDSLSVEGAQGAGAVESAAGVLIKLFCVHTKALQDVQIRFQPLHSPDMAASIPSHGSHE
DFAFPDHLADLGTEGLGSEKGSIHGSQSDLRRISDLPVPADFLSLSNDAKPKLMTPDAFM
TPSTSLQQITVSPGSSVSSLTAVTAMSSTSVNDTAMSSHRPSEDLTLNPKMQLDTSITLS
SSGSSLQTSPRNHSVLIPGLPDKLTAKAPVPVAPGNPPLSLELKEVEPLVVPQASPTRER
SPDVISSASTAMSQDIPEIASETLQRSFAAAPTGLPAEVLEANHHADSMASAASALHLLS
PRNRHNSEHSHHSLDMAPVEVDRLNTPSLLETALTQENASSDSVVSQPWPAAPDITRETR
NSMADSPRDEVEEKHKSSSYHRHSYHLLQHDSQDASAEQSDHDDEVASLASTSGGFGAKV
SAQRLPVKDWKTKASPRASPKLKRKGKKEDGDVTQSPRSSDHQVTPEYQDELMSLLRNQQ
RELTELRQNQMELMRRLTDHLDAVQSSLMGHVERVIGSQQEQEQRRLDRALTEWHQRNEQ
LQEHLSQQLSQSMSTAVCNRLERTIREEMKKTVPQCISKSMDPVTGQLSNTIATKLTAVE
GTLKENVTKLVKSKNLTDTIVRAAADALQGPIQSAYREAFQSIVLPAFEKSCQSMFQQIN
DTFKQGTQEYIQQLETHMKNKKVREQEARDPLLSQLRQLITTFQSTTEQLASTITASVHA
EVQHQLHIIVGNMQESILTQVQRVIKGEVSLAMKEQQAAVTSSIMQAMRSAAGTPIPSAH
LDFQSQQAHILQLLQQGHLNQAFQQALTAADLNLVLYVCETVDPQQVFGQHPCPLSQPVL
LSLIQQLSSDLGTRTELKLSYLEEAVMHLDHSDPITRDHMGSVMSQVRQKLFQFLQAEPH
NSLGKAARRLMIMLQGLVTPSMT
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
atggcctccgccagcatcgacatcgaggacgcgacccagcacctgcgcgacatcctcaag
ctggaccggcctggaggttcagtgaatgaaaatcagcgaccatccaattcatacaatggg
gacctgaacgggctgctggtgccagaccccatcacagctggagatggagcttcattggct
aagccaatgcaccgcagtgttcctctgggaaccctgcaggagaagcaagtcatctgcctt
tctggagatgatggctctacctgcctcgtgatatcagcgaaagatgtggagatagtagcc
agtagtgattctagcatcaccagtaaggccagagggagcaacaaggtaaaaatccaacca
gttgccagatacgactgggagcagaaatactactatggaaacctgatagcagtctcaaac
tcttacctggcatatgccatccgaggtgccactaacggctccgccatggtgcgtgtgctg
agtgtcagcacagctgagcgaaccttgctgaaaggattcacgggtggtgtggcagacttg
gctttcgcccatctcaactccaaccagctagcctgcctggatgaggctggcaacctcttt
gtctggcgcctagccatggttaatgggaaaatccaagaggagatcctggtgaacattaaa
cgacctgacggtaccccgttgaacaactttcggaggatcatatggtgcccctttattcca
gatgagaatgaggagagcagtgaagaggggagccaaatactggcgctgctgcatgaggac
agggcagaggtttgggatctggacataatccgagccaatgatagctcttggccagtggag
gtcaccaacatcaaagagggcttcattgtggtgaaaggccacagcacgcgtctaagtgag
ggagcgctgtctccagatggaaccgtcttggccacagcaagtcatgacggctatgtcaaa
ttctggcagatctacattgaaggacaggatgagccaagatgccttcatgaatggaagcct
catgatgggaagcctctttcctgcctgctcttctgtgacaatcataaaaaacaagaccca
gaggttcctttctggagatttctcatcacaggtgcagatcagaatcgggaactgaagatg
tggtgcactgtgtcttggacctgtctgcagactgtccggttttcctctgatatcttcagt
tccgtgaacattcttccaagtttgaaggtctgcctggacctctctgctgaatacctgata
ctgagtgatgtgcagagaaaagtcttgtatgtgatggagctgatgcagaaccaggaagaa
ggtaaagcctacttcagctccatttcagagttcctcctcacccacccagtcctgagcttc
ggcatccaggcagtgagtcgctgccggctaagacacactgaggtccttccagctgaagag
gaaaatgactcccttagtgtagaaggggctcagggggctggggctgttgaatctgcagca
ggcgtgctgatcaagctcttctgtgtccacaccaaggcccttcaggatgtacagatccga
ttccagcctcttcatagcccagatatggctgcatcaataccctcccatggctcccatgaa
gattttgcatttccagaccacttggctgacctgggcacggaagggctgggatcagagaag
ggatccatacatggttcccagtctgacttacggcgcatttcagacctacctgtgcctgca
gactttctctctctctcaaatgatgccaaacccaagctaatgaccccagatgcattcatg
accccgagcacatctcttcagcagatcaccgtgtcacctggtagcagcgttagttccctg
actgcagtcacagcaatgagcagtacttctgtcaatgatactgccatgtccagccacagg
ccatctgaagacctgaccttgaacccaaagatgcagttggataccagcatcacactgagc
agcagtggtagcagcctccagaccagtcccagaaaccattctgttcttatccctggactc
cctgacaaactgaccgccaaggcacctgtcccggttgcacctggaaacccacctctctct
ctagagctgaaggaagtggagccccttgtggtaccccaggcttctcccacccgtgagcgc
tccccagatgtaatttcttcagcctccactgctatgtctcaagatatcccagagattgcc
tcggagaccctgcagcgcagctttgcagcagccccaactgggctccctgcagaggtactg
gaggccaaccaccatgcagacagcatggcatcagctgcttcggccttgcacttgctgtct
ccaagaaacaggcacaattccgagcacagtcaccactccctggacatggcccctgtggag
gtggacagactgaacactccctcattgctggagactgctttaactcaggaaaatgcttct
tctgacagtgttgtgagccagccatggcctgcagctcctgacatcaccagagaaaccagg
aacagcatggcagacagccctagggatgaggttgaagagaagcacaagagctcttcctat
cacagacacagctaccacctgctgcagcatgacagccaggatgccagtgcagagcaaagt
gaccatgatgatgaagttgcaagtttggcttctacatcaggtggatttggtgccaaagta
tctgcacagaggctgcctgtgaaggactggaaaaccaaggcatcccctcgggcttcccca
aagctaaagcggaagggcaagaaagaggacggggatgtgacccagtccccacgatcatct
gatcaccaggtgactcccgagtatcaggatgagctgatgtctctgctgagaaaccaacag
agagagctcaccgagttacgacagaaccagatggagctgatgcggagactcactgatcac
ctggacgctgtgcagagctccctcatgggccatgtggagagagtaattggctctcagcaa
gagcaagagcagaggaggctagaccgagctctgacagaatggcaccagcggaacgagcag
ttacaggagcacctgtcccagcagctctctcagtccatgtccaccgctgtctgtaatcgc
ctggagaggaccattcgtgaagagatgaagaagacagtgccccaatgtatttccaaaagc
atggaccctgtcactggacagctgagtaacaccattgcaaccaaactcacagctgttgaa
ggcacattgaaggagaatgtcactaagctggtgaaatcaaagaaccttacagataccatt
gtgagggcagctgcggatgccctgcagggacccatccagtcagcctacagagaggcgttc
cagagcatcgtgctgcctgcatttgagaagagctgccagtccatgttccagcagatcaat
gacacgttcaagcagggcacacaggaatatatccaacagctggagacccacatgaagaac
aaaaaggtgcgagaacaggaggcacgggaccccctgctgagccagctccgacagctgatc
accaccttccagagcaccacagagcagctggcttccaccatcacggccagtgtccatgct
gaagtgcagcatcagctgcatatcatcgtgggcaacatgcaggagtccattctgacccag
gtgcagcgggtcatcaagggggaggtgagcctggccatgaaggagcagcaagcagctgtc
acctcaagcatcatgcaggcaatgcgctcagcagcaggcacacccatcccctccgctcac
ctggacttccagtctcagcaggctcacatcctgcagctgctgcaacagggccacctcaac
caagcttttcagcaggctctcactgcagctgatctgaatctggtcctgtatgtttgtgag
actgtggatccacagcaagtttttgggcagcatccatgtccactgtcccaacctgtcctc
ctctctctcattcagcagctctcttcagatttgggtacccggactgaactgaaactgagt
tacctggaggaggcagtgatgcacctggatcacagcgaccccatcactcgagaccacatg
ggctctgtcatgagccaggtgcggcagaagctcttccaattcctgcaggcggagccccac
aacagcctgggcaaggctgcccgccgcctcatgataatgcttcagggcttggttacaccc
agcatgacctaa
DBGET
integrated database retrieval system
