Gavialis gangeticus (Gharial): 109289913
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Entry
109289913 CDS
T07453
Symbol
CNOT6
Name
(RefSeq) CCR4-NOT transcription complex subunit 6 isoform X1
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
ggn
Gavialis gangeticus (Gharial)
Pathway
ggn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ggn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109289913 (CNOT6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ggn03019
]
109289913 (CNOT6)
Enzymes [BR:
ggn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
109289913 (CNOT6)
Messenger RNA biogenesis [BR:
ggn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109289913 (CNOT6)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
109289913 (CNOT6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_8
LRR_14
LRR_4
LRR_1
LRR_LRWD1
LRR_R13L1-DRL21
Motif
Other DBs
NCBI-GeneID:
109289913
NCBI-ProteinID:
XP_019361733
LinkDB
All DBs
Position
Unknown
AA seq
557 aa
AA seq
DB search
MPKEKYDPPDPRRMYTIMSSEEAANGKKSHWAELEISGKVRSLSSSLWSLTHLTALHLSD
NSLSRIPSDIAKLHNLVYLDLSSNKIRSLPAELGNMVSLRELHLNNNLLRVLPFELGKLF
QLQTLGLKGNPLTQDILNLYQEPDGTRRLLNYLLDNLAGTAKRISTEQPPPRSWIMLQEP
DRTRPTALFSVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKAIMQEILSCNADIISLQE
VETEQYYSFFLVELKERGYNGFFSPKSRARTMSEQERKHVDGCAIFFKTEKFTLVQKHTV
EFNQLAMANSEGSEAMLNRVMTKDNIGVAVLLELRKELIEMSSGKPHLGMEKQLVLVANA
HMHWDPEYSDVKLVQTMMFLSEVKNIIDKASRSLKPGVSGELGTIPLVLCADLNSLPDSG
VVEYLSTGGVETNHKDFKELRYNESLTNFSCNGKNGTTNGRITHGFKLKSAYENGLMPYT
NYTFDFKGIIDYIFYSKPQLNILGILGPLDHHWLIENNISGCPHPLIPSDHFSLFAQLEL
LLPFLPPVNGIHLPGRR
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaggaaaagtacgatccacctgatccacggaggatgtacacaattatgtcctca
gaagaagcagcgaatggaaagaaatcacattgggcagagttggaaataagtggaaaagta
agaagcttaagttcatcgttgtggtcgctgacccatttgacagctttgcatctcagtgac
aattccttatcccgtattccttcagacattgccaagcttcacaatctggtatacttggac
ctgtcctctaataaaatccgcagtttaccagcagagctcggaaacatggtgtcactcagg
gaactccatttaaataacaacctgttacgagttttacctttcgagctgggaaaactgttc
cagttacagacgttgggtctgaaaggaaatccacttacacaggatattctgaacctctat
caggaaccagacggaacacgaaggctactgaattatttgcttgataatttggcaggtact
gcaaaaagaatttcaacagaacagccacctccaagatcttggattatgttgcaagaacca
gaccgaacaagaccaacagccttgttttctgtcatgtgttacaacgtactttgtgataaa
tatgctacccggcagttatatggctattgtccatcatgggcactgaactgggaatacaga
aaaaaagccattatgcaggaaattttgagctgcaatgctgacatcataagtcttcaggag
gttgaaaccgaacagtactacagtttctttctagtagaactgaaagagcgtggctataat
gggttcttcagtccgaaatctagagccaggacaatgtcagaacaagaaagaaaacatgtt
gatggttgtgcaatatttttcaaaacagaaaaattcactttggttcaaaaacatactgtt
gagtttaatcaactagctatggcaaactcagaagggtctgaagctatgctgaaccgagtt
atgacaaaggataacattggagttgctgtactgctagagttgcgaaaagaattgatagaa
atgtcatctggaaagccacatcttgggatggagaagcagctagttcttgtagctaatgca
catatgcattgggatcctgagtattctgatgtgaagctggttcagactatgatgttcctc
tctgaggtaaagaacattattgataaagcctctcgtagtctcaaacctggtgtttcggga
gaacttggaaccattccacttgtactgtgtgcagatctcaattctctgccagattctggt
gttgttgagtacttgagcactggtggcgtggaaacaaatcataaagattttaaggaactg
cgatacaatgaaagtctgactaacttcagctgtaatgggaaaaatggaacaacgaatgga
aggatcacacatggtttcaagttgaagagtgcctatgagaatggcctaatgccttacaca
aattatacgtttgacttcaagggtattattgactacatcttctactctaaacctcagcta
aacatacttggcattcttggacctttggatcatcattggttaatagagaacaatataagt
ggttgtccacatccactcatcccttctgaccacttctcactttttgcacaactggagctt
ttgctgcctttcctgcccccggtaaatggaatccatctcccaggcaggaggtag
DBGET
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