Gavialis gangeticus (Gharial): 109290170
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Entry
109290170 CDS
T07453
Symbol
PCDH1
Name
(RefSeq) protocadherin-1
KO
K16498
protocadherin delta 1
Organism
ggn
Gavialis gangeticus (Gharial)
Pathway
ggn03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
ggn00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
109290170 (PCDH1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ggn01009
]
109290170 (PCDH1)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ggn04515
]
109290170 (PCDH1)
Protein phosphatases and associated proteins [BR:
ggn01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
109290170 (PCDH1)
Cell adhesion molecules [BR:
ggn04515
]
Cadherins
Protocadherins
109290170 (PCDH1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
TMEM154
K319L-like_PKD
Mid2
MLANA
Syndecan
EphA2_TM
Motif
Other DBs
NCBI-GeneID:
109290170
NCBI-ProteinID:
XP_019362111
LinkDB
All DBs
Position
Unknown
AA seq
1099 aa
AA seq
DB search
MEKPEERRAGGSRGAQHCPRPIPLWCRMKQLASCLGLWVLLQFPASSSGTRVVYKVQEEQ
PPNTLIGSLAADYGFPDVGHLYKLEVGAPYLRVDGKTGDIYTTETSIDRESLRECQHQFP
GDPCFLEFEVSITDLIMNSSPRLLEGQIEVLDINDNTPNFVSPVITLAIPENTNIGALFP
ISLAMDRDSGPNGVASYELMAGPEAQELFGLQVAEDQDEKQPQLIVMGNLDREQWDSYDL
TIKVQDGGNPPRASSALLRITILDMNDNAPKFEKALYEAELSENSPVGHSVLQVKANDSD
QGANAEIDYSFHQATDMVRRLLRLDRATGLITVQGPIDREDVNILKFSVLAKDKGANPKS
ARTQVVVTIKDMNDNAPSIEIRGIGLVTHQDGMANISEDVPVETAVALVQVSDRDEGENA
VVTCVVAGDVPFQLRQASETGSDSKKKYFLQTTTPLDYESVKEYTIEIVAVDSGNPPLSS
TNSLKVQVVDVNDNAPVFSQSFTEVAFPENNDLDDLVMEVSASDADSGSNAKLVYSLVMD
PSSKGIFSIDPDSGEIRVKTVLDREQRERYEFLVVAADKGSPSLKGTASVAINVMDKNDN
DPKFMLSGYNFSVMENMPPLSPVGMVTVIDADKGDNARIQLSVEQDNGDFVIQNGTGTIL
SSISFDREQQSTYTFRLKAVDAGDPPRSAYVGVTINVLDENDNAPFITSPSNASYKHILP
HTSPGQQVSKVKAEDIDSGVNAELIYSITGGNPFELFQISPSSGDITLEKEILRKHHGLH
RLVVRVNDKGKPSRHGTALVHFYVNETLANRTVLETLVGHSLDTPLDIDIAGDPEYERSK
QRSNILFGVIAGIVAVTLVIVLVILVRYCRQREAKSGYQAGKKETKDLYAPKQGNKSSKS
KNKVKKSKSPKPPKPAEDEEETGLQKSLKFNLMNDSVSDSPRIHLPLNYPPGSPDLGRHY
RSNSPLPSIQLQPQSPSASKKHQVVQDLPATNTFVGTGDNNSTGSEQYSDYSYRTNPQKY
TNKQLPHRRVTFSAASQAQDLQDPSQHSYYDSGLEESETPSSKSSSGPRIGPLALPEDHY
ERTTPDGSIGEMEHPENVE
NT seq
3300 nt
NT seq
+upstream
nt +downstream
nt
atggagaagcccgaggagcgccgcgctgggggcagccgcggcgcacagcactgtccgcgc
ccaatccccctgtggtgcagaatgaagcagctggcgtcatgccttggcctatgggtcctc
ctccagttccctgcctcaagttctgggacacgtgtggtctacaaggtacaggaggagcaa
cccccgaacacactcatcgggagcctggctgctgactatggctttccagatgtggggcat
ctctataagctggaagtgggggccccctatctgcgtgtggatggcaaaacgggggacatt
tacaccactgaaacttccatagaccgggagagcctacgtgagtgccagcatcagttccca
ggggatccttgcttcctggagtttgaggtgtccatcacagatctgataatgaacagcagt
ccacgccttctagagggtcagattgaggtactggatatcaatgacaacacaccaaacttt
gtctcacctgttatcacactggccatcccggagaacaccaacattggggctctctttccc
atctcactggccatggaccgtgactcaggccccaatggtgtggcctcctatgagctcatg
gcagggcctgaagcacaggagctctttgggctacaagtggctgaggatcaggatgagaag
cagccacagctaattgtcatggggaacctggatcgggagcagtgggactcttatgacctg
accatcaaagtgcaagatgggggaaaccctccacgggcaagcagtgcccttctgcgcatc
actatcctggacatgaatgacaatgcacccaagtttgaaaaggccttgtatgaagcagag
ctctcagaaaacagtcctgttgggcattctgtccttcaggtgaaagccaatgactcggat
cagggcgccaatgccgaaattgactattcctttcaccaggccacagacatggtacgccgc
ctgctacgcctggatagagccacaggcctcatcactgtacaggggcccattgatcgggag
gatgttaacatcctcaagttctctgtcctggcaaaggataaaggggctaatcctaagagt
gcccgtactcaggtagtggtgaccataaaggatatgaatgataatgccccctccattgag
atccgaggcattggtcttgtcacccaccaggacggcatggcaaacatttctgaggatgta
cctgtggagacagctgtggccctggtgcaggtgtctgaccgggatgaaggagaaaatgct
gtggttacctgtgtggttgccggtgatgttccattccagctgcgacaggccagtgagacg
ggcagtgacagcaagaagaagtacttcttgcaaaccaccacaccactggactatgagtca
gtgaaggagtacaccattgagattgtggctgtggactcaggaaacccacctctctccagc
actaactcccttaaagtgcaggtggtggatgtaaatgacaatgcccctgtctttagccag
agcttcactgaagtggccttccctgaaaacaatgaccttgatgacctagtgatggaggtg
agtgccagtgatgctgatagtggctctaatgccaagcttgtttactcgttggtgatggat
ccttcctccaagggtattttttctattgatcctgattctggtgaaatccgagtgaagacg
gtgctggaccgggagcagagggagcgctatgaattcctggtggtggcagctgacaagggc
agccccagcctcaagggtacagcatctgtggccattaatgtcatggacaaaaatgacaat
gaccccaagttcatgttaagtggctacaacttctcagtgatggagaacatgccacctttg
agcccagtaggtatggtgacggtgattgatgctgacaagggtgacaatgcccgcatccaa
ctttcagtagaacaagacaatggggactttgtgatccagaatggcactggcaccatcctc
tccagtatttcttttgaccgggagcaacagagcacatacaccttccggctcaaggctgtg
gatgcaggggaccctcccagatctgcctatgtgggagtgaccatcaatgtactggatgag
aacgacaatgccccttttattacctccccttccaatgcctcttataaacacatcctgccc
cacaccagccctgggcaacaagtcagcaaggtcaaggctgaagacattgattctggggtc
aatgcagagctgatctatagcattactgggggcaacccttttgagctcttccagatttca
cctagcagtggggatatcacactggagaaagagatcttgcgtaagcatcatggcctgcac
cgcctagttgtgcgtgtcaatgacaagggcaagccctcacgccatggaactgcactagtg
cacttttatgtcaatgagaccctagctaatcgcactgtgctggagaccttagtggggcac
agcctggacacacccctggacatagacattgctggggatcctgaatatgagcgcagcaag
caacgcagcaacatcctctttggagtcattgctggcattgtggctgtaacacttgtcatt
gtgctggtcattcttgtgcgctattgtcggcagcgggaggccaagagtggctaccaagca
ggcaaaaaagaaaccaaggacttgtatgcacctaaacagggtaacaagagcagcaagagc
aagaacaaagtgaagaagagcaagtctcccaagccacccaagccagcagaggatgaagag
gagacggggctgcaaaaatccctcaagttcaacctcatgaatgactctgtaagtgacagc
ccccggatccatctacccctcaactatccacctgggagcccagacctggggcgtcactac
cgctccaattcaccgctgccctccatccagctgcagcctcagtctccatctgcttccaaa
aaacaccaagtggtacaggatctgcctgctacaaacacctttgttggcactggggacaat
aactcaacaggctctgaacaatactcagactacagctaccgcaccaatccccagaaatat
accaacaagcagttacctcatcgccgagtgacattctctgcagccagtcaggcacaggac
ttgcaggacccctcccaacatagttattatgacagtgggctagaggaatcggagacaccc
agcagcaaatcatcatcagggcctcgcattgggcctctggctctgcctgaagatcactat
gagcgcaccacacctgatggtagtattggggagatggagcaccctgaaaatgtggagtga
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integrated database retrieval system
