Gavialis gangeticus (Gharial): 109290416
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Entry
109290416 CDS
T07453
Symbol
SMARCB1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 isoform X1
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
ggn
Gavialis gangeticus (Gharial)
Pathway
ggn03082
ATP-dependent chromatin remodeling
ggn03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
ggn00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
109290416 (SMARCB1)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
109290416 (SMARCB1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ggn01009
]
109290416 (SMARCB1)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ggn03021
]
109290416 (SMARCB1)
03036 Chromosome and associated proteins [BR:
ggn03036
]
109290416 (SMARCB1)
Protein phosphatases and associated proteins [BR:
ggn01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
109290416 (SMARCB1)
Transcription machinery [BR:
ggn03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
109290416 (SMARCB1)
SWI/SNF complex
109290416 (SMARCB1)
Chromosome and associated proteins [BR:
ggn03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
109290416 (SMARCB1)
PBAF complex
109290416 (SMARCB1)
SWI/SNF complex
109290416 (SMARCB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
DUF1679
Motif
Other DBs
NCBI-GeneID:
109290416
NCBI-ProteinID:
XP_019362456
LinkDB
All DBs
Position
Unknown
AA seq
386 aa
AA seq
DB search
MMMMALSKTFGQKPVKFQLEEDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEER
KKIVASSHESQRSHSPRRYHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTY
LREQKAKRNNQWVPTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHEN
ASQPEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIAS
AIRQQIESYPTDSILEDQSDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCS
ELGLGGEFVTTIAYSIRGQLSWHQKTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDA
EMEKKIRDQDRNTRRMRRLANTAPAW
NT seq
1161 nt
NT seq
+upstream
nt +downstream
nt
atgatgatgatggcgctcagcaagacgttcgggcagaagcccgtcaagttccagctggag
gaggacggcgaattctacatgatcggctccgaggtggggaactacctgcgcatgttccgg
ggctccctgtacaagcggtacccctcgctgtggaggcggctggccaccgtggaagagagg
aagaaaatcgtggcatcttctcatgagtcacagcggtctcacagtcccagaagatatcac
ggttatacaacattagccactagtgtgacactcttgaaagcatctgaagtggaagagatc
ttggacggaaatgatgagaaatataaggcagtgtctatcagcacagagcctcccacctac
ctcagagagcagaaggccaagaggaataaccagtgggtgcccaccctgcccaacagctct
catcaccttgatgctgtgccgtgctcaaccaccattaacagaaaccgcatgggcagggac
aagaaacggacctttccactctgctttgatgaccatgacccagcagtgatccatgagaat
gcgtcgcagccagaggttctggttccaatccggctggacatggagatcgatgggcagaag
ctcagagatgcatttacgtggaacatgaatgaaaagctcatgactccagaaatgttctca
gagatcctctgtgatgacctggatttgaacccactgacctttgtccctgccattgcctct
gcaatccgacagcagattgagtcttacccaactgacagtatcctagaggaccagtcagat
caacgagttattattaagctaaatatccatgtagggaatatctctctggtagaccagttt
gaatgggacatgtcggagaaggagaattcaccagagaagtttgcactgaagctgtgttca
gagctcgggctgggcggggagtttgtcaccaccatcgcctacagcattcgaggacagctg
agctggcatcagaagacttatgccttcagcgagaacccactgccgaccgtggagatcgcc
attcgcaacaccggcgacgctgatcagtggtgccccctgcttgagaccctgacagatgca
gagatggagaagaagatcagggaccaggacagaaatacaaggcgtatgagacgtttggcc
aacactgctccagcctggtaa
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integrated database retrieval system
