Gavialis gangeticus (Gharial): 109290877
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Entry
109290877 CDS
T07453
Name
(RefSeq) putative RNA exonuclease NEF-sp isoform X1
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
ggn
Gavialis gangeticus (Gharial)
Pathway
ggn03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
ggn00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
109290877
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ggn03009
]
109290877
Ribosome biogenesis [BR:
ggn03009
]
Eukaryotic type
Pre-60S particles
RNases
109290877
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RNase_T
DUF6602
Motif
Other DBs
NCBI-GeneID:
109290877
NCBI-ProteinID:
XP_019363246
LinkDB
All DBs
Position
Unknown
AA seq
781 aa
AA seq
DB search
MEEADRPRGPARPREGSDSAEDAPRRRGKRRRPEQGGPRGAKEKKARLSAELFGEDCEIS
HDQVYEFLKYAALGKHHNAAQPSWCHIHHQRHLAQVVVIVLHEVSQLHFYRFYLQFKHLR
KSFPHRFSLPPDSANFIASMCREGVSAKHHNSTQASPHVFNGHILKSTNLEQDPVVQKYG
GKKRGLTTYTLTVQEMKENNYPLEGSPGCLHFVHTECNSPRTDSSPLFGLDCEMCLTTKG
NEVTRVSLVDAQGQCLLDELIKPETQILNYFTRYSGITRKILLPVKTKLADVQDKLKKLL
PHDAILVGHSLNADLQALQMIHPSVIDTSLLFARSGGRRFKLKFLAKAVLGKEIQCENKL
GHDPTEDAQAALELAQYFIKQGPCKVEELNLETLLIAQKASEISQQKSTLYLQLNGVQQQ
SSEGSSIPQLCFLDSLRLAGQQTLLLGRQDLASPGSCQNGQRPSNKQILQRAIEEVPLSS
FSVVQFSLHSKHVVPALIADICEKMRIKLGDLLTLYAGPFGKDFCLKSVKKEFKKYGPVR
SLTVITETHQPHICVQYEVLEAAQLALESLNGAEIAGSCIKVQRPVSAVTLDCNTLIKEL
EMDVENERVIYMAGVKKSLTETNLQEKLSQLKDLKALFLPRDHKDGKRQSYCFLKFRTAE
SASSALEVIKRWATMGSKLKSRRALTPSHLNQWINHMAHQDTQSLQEGENVLYMKKKQVS
MCEQDLREKLKKLDCRIKKLYRSLQNNTLCVVLLPGTNSVHRSLSGLGLMGIKDDTGKSM
C
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
atggaggaggccgaccgcccgcgcggcccggcgagacctcgcgagggtagcgacagcgcc
gaggacgccccccggcggcggggcaagaggaggcggccggagcagggcggcccgcgtggg
gcaaaggagaaaaaggcacgcttgtcagcagaattgtttggtgaggactgtgaaatcagc
catgaccaggtgtatgagttcttaaagtacgcagctttgggaaaacatcacaatgcagct
caacccagctggtgtcatattcatcaccaaagacacctggctcaggttgtggtcattgtt
ctacatgaagtgagccagcttcacttctacaggttctatttacagttcaaacatctcaga
aagtcattcccgcatagattcagtttaccacctgattcagctaattttatagccagcatg
tgcagagaaggagtgagtgcaaaacaccataacagcacacaagcgtcacctcatgtcttc
aatggacatatccttaagagcaccaacttggaacaagaccctgttgttcagaaatatgga
ggaaaaaaacgtggtcttaccacctacactctaacggtgcaagagatgaaagaaaataat
tatcctttagaaggatcgcctgggtgtctacattttgtccacactgaatgcaacagccca
aggacagacagcagccccctctttgggttggattgcgaaatgtgcctcactacgaagggg
aacgaagtcacccgagtctcactggtggatgcacagggtcagtgccttctggatgagctt
ataaaacctgagacccagattctgaactacttcaccagatactcaggaatcacaaggaag
attcttcttccagtgaaaaccaaacttgcagatgtccaggacaaactaaagaaattgctt
ccccatgacgcaatattggtgggtcattctttaaatgctgacctccaagctttacaaatg
atccatcccagtgttattgacacttcattgctttttgccagaagtggaggtcgaagattc
aagttaaaattcttagcaaaagctgttttagggaaggaaattcagtgtgaaaacaagctt
ggtcatgatccaacagaagatgctcaagctgcacttgaactggctcaatacttcattaaa
caggggccttgcaaggtagaagaactaaacttggagacactgctaattgcccaaaaagcg
agtgagatctcacaacagaagtccaccttgtacctacagctgaacggagtccaacagcaa
tcaagcgagggttccagcataccccagctatgttttttagattctttgcgcttggctggc
caacaaaccctccttttgggcagacaggacctagcctcccctggttcatgtcagaatggc
cagagaccttcaaacaaacagattcttcagcgagccatagaagaagttcccctgtcctcc
ttcagtgtcgttcagtttagtttgcattcaaagcatgtcgtacctgccctcatagctgat
atttgtgaaaagatgagaatcaagctgggtgacttgctgactctttatgcaggcccattt
ggtaaagatttttgcctgaagtctgtaaagaaagaatttaagaagtatggtccagttcga
tcactgactgtcatcactgaaacacaccagccccacatctgtgtccagtatgaagtacta
gaggctgcccagcttgccctggagagtctgaatggagctgagattgcaggatcctgcatt
aaggttcagaggcctgtctctgcagttacattagattgcaacaccttgataaaggagctg
gaaatggatgtagaaaatgaaagggtgatttatatggcaggagtaaagaaaagcctaaca
gagacaaacttgcaagaaaaattgagtcaactgaaagacctgaaagctctcttcttgcct
agagaccataaagatgggaagcgccaaagttactgtttcctgaaattccgaactgcagaa
agtgcttcaagtgcacttgaggttataaagagatgggcaactatgggcagcaaactgaaa
agcagaagagctctcactcctagccacctcaaccaatggattaatcacatggctcatcag
gacacacaatcacttcaggaaggagaaaatgttctatacatgaaaaagaagcaagtctct
atgtgtgagcaagacctaagggaaaaactgaagaagttagactgcagaatcaaaaagctt
tatagaagcctacagaataatacactttgtgtcgttctgctgccaggcacaaacagtgta
cacagatcactatctggcttgggcctgatgggaataaaagatgatactgggaagagcatg
tgctag
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