Gavialis gangeticus (Gharial): 109292803
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Entry
109292803 CDS
T07453
Symbol
PRPF4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4 isoform X1
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
ggn
Gavialis gangeticus (Gharial)
Pathway
ggn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ggn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109292803 (PRPF4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ggn03041
]
109292803 (PRPF4)
Spliceosome [BR:
ggn03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
109292803 (PRPF4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40_Prp19
WD40
Beta-prop_THOC3
WD40_CDC20-Fz
WD40_Gbeta
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_WDR36-Utp21_1st
PRP4
WD40_MABP1-WDR62_1st
Beta-prop_EML
Beta-prop_Aladin
WDR90_beta-prop_4th
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_DCAF4
Beta-prop_SCAP
Beta-prop_EIPR1
Beta-prop_WDR41
Beta-prop_RIG_2nd
Beta-prop_IFT122_1st
Beta-prop_Vps41
WD_LRWD1
Beta-prop_IFT140_1st
WD40_like
WD40_RFWD3
Beta-prop_WDR35_TULP_N
Beta-prop_WDR11_1st
Motif
Other DBs
NCBI-GeneID:
109292803
NCBI-ProteinID:
XP_019365940
LinkDB
All DBs
Position
Unknown
AA seq
522 aa
AA seq
DB search
MASARGPAVRATKTKISDDSDAPPVKRPHIFYGSLEEKERERIAKGELGLLGKDGMKAAI
QAGNINISSGEVFDLEDHMSERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPIT
LFGEGPAERRERLRNILSVVGTDALKKTKKDDDKSKKAKEEYQQTWYHEGPSSLKTARLW
IANYSLPRAVKRLEEARLLKEIPEATRTSQRQELHKSLRSLNNFCSQIGDDRPISYCHFS
PNSKLLATACWSGLCKLWSVPDCSLVHTLRGHNTNVGAVVFHPKATVSLDKKDVNLASCA
ADGSVKLWSLESDEPVADIEGHTMRVARVMWHPSGRFLGTTCYDHSWRLWDLEAQEEILH
QEGHSKGVYDIAFHMDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGINFSPNGY
HIATGSGDNTCKVWDLRQRKCIYTIPAHQNLVTGVKFEPNHGNFLLTGAYDNTAKVWTHP
GWSPLKTLAGHEGKVMGLDISLDGQLMATCSYDRTFKLWMAE
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccgcgcggggccctgcggtgcgggctacaaaaaccaagatctcagatgacagt
gatgctcccccagttaagagacctcatatcttctatggcagtttggaggagaaggaaagg
gagcgtattgccaaaggggagctggggctgctaggaaaagatgggatgaaagctgcaatc
caggccggcaacattaacattagcagtggtgaggtcttcgatcttgaagaccatatgagt
gagcgccaggcagaagtgttggctgaatttgagcgcaggaaacgtgctaggcaaatcaat
gtttccactgatgactctgaagtcaaggcctgcttacgagctcttggggagcccatcaca
ctctttggagaagggcctgcagaaagaagagaaagattgagaaatatcctctcggtggtt
ggcactgatgccttaaaaaaaacaaagaaagatgacgacaagtctaagaaagccaaagaa
gagtatcagcaaacctggtaccatgaaggaccaagcagtttgaaaacagctagattgtgg
atcgccaactactcactccccagggcagtgaagcggttggaagaagcccgactgctcaaa
gaaattcccgaggctaccaggacatcccagaggcaagaactgcacaagtccctaaggtca
ttgaataatttctgcagtcagattggagatgatcgccccatctcttactgccatttcagt
cccaattccaaactcctggctactgcttgttggagtgggctgtgcaaactctggtctgtg
cctgactgcagtctcgttcacactttacgagggcacaacaccaatgtgggggcagttgta
ttccatcccaaagctactgtctccctggacaagaaggatgtcaacttggcctcatgtgca
gctgatggttctgtcaaactgtggagccttgaaagcgatgagccggtggcagatattgaa
ggtcacaccatgagagtggcacgagtgatgtggcatccctctgggaggttcctgggcacc
acttgctatgatcactcctggcgcctgtgggacttggaagctcaggaagagattcttcat
caggaaggccacagcaaaggggtctatgacattgctttccacatggatggatctctcgct
gggactggtggccttgatgcctttggccgggtgtgggacttgcggaccgggcgctgtatc
atgttcttggagggtcacctgaaagagatctatgggatcaacttctccccaaatggatac
cacatagcaactggcagtggggacaacacttgcaaggtgtgggacctccgccagaggaag
tgcatttacactatacctgcccaccagaacctagtgacaggggtgaagtttgaacccaat
catggaaacttcctgctcacaggcgcctatgataacacagcaaaagtctggacccatcca
ggctggtccccattgaaaacactggctggccatgaaggaaaagtaatgggactggatatc
tccttagatgggcagctcatggcaacatgttcgtatgataggaccttcaagctgtggatg
gcggagtag
DBGET
integrated database retrieval system
