Gavialis gangeticus (Gharial): 109292935
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Entry
109292935 CDS
T07453
Symbol
NUP188
Name
(RefSeq) nucleoporin NUP188 homolog isoform X1
KO
K14311
nuclear pore complex protein Nup188
Organism
ggn
Gavialis gangeticus (Gharial)
Pathway
ggn03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ggn00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
109292935 (NUP188)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ggn03019
]
109292935 (NUP188)
Messenger RNA biogenesis [BR:
ggn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
109292935 (NUP188)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nup188_N-subdom_III
Nup188_N
Nup188_SH3-like
Motif
Other DBs
NCBI-GeneID:
109292935
NCBI-ProteinID:
XP_019366155
LinkDB
All DBs
Position
Unknown
AA seq
1738 aa
AA seq
DB search
MAAGGLCARSSRELWTILLGRSALRETAQIAAELNKHWQRLLEGLSYYKSPSSSSAEKVK
ADKDVAAPLKELGLRVSKFLGLDEEQSVQLLQCYLQEDYRGTRDSLKTVLQDERQSQALM
LKLADYYCEERICILRCVLHLLTYFQDERHPYMAQYSQCVEKLEKELVPNYRKQFEELYK
AEAPTWETHGNLMTERQVSRWFVQCLREQSMLLEVIFLYYAYFEMAPDELLAFARMFRDQ
GFGSRQTNRHLVDESMDHLVDRIGYFSALILVEGMEIDSLHERALDDRTEEHKLANNGHV
HQQEMDRLLLTLGDVSHHAPVLLAWALLRHTISPEESTHIIRRMGSTAIQLNVFQYLTKL
LRSLSSGGKNCTASTACMCIYGLLSFVLTSLELRTLGNQQDIIDAACEVLAASSIPQLFW
RTEPTAGLGIILDSVCGMFPHHLSPLLQLLQALVSDKSTAKKVYSFLDKMSFYIELYKNK
PPDVISHEDGTLWRKQAPKLLYPLGLGQTNLRIPQGTVGQVILEDRGYLVRWEYSYSSWT
LFTCEIEMLLHVVSTADVIQHCQRVKPVIDLVHKVISTDVSVADCLLPITSRIYMLLQRL
TTVISPPVDVIASCVNCLTVLASRMPAKVWTDLHHTGFLPFVANPVSSMSRMISAEGMNA
GGYGNLLMSIEQPQGEYCVTISFLHLITTLVRGQLGSTQSQGLMPCIVFVLKEMLPNYHK
WRYNSHGVRERIGCLILQLIHAILNLCPEMDPHSSSAPSLQSLCIFSLANTEAGQAVINI
MGIGVDTIDMVMASQSSSDESLGQGQLLIQTVKLAFSVTNNVIRLKPPSSVVSPLEQALT
QHGAHGNNLIAVLAKYIYHRHDPALPRLAIQLLKRLATVAPMSVYACLGSDAAAIRDAFL
TRLQSKIEDMRIKVMILEFLTVAVETQPGLIELFLNLEVKDGDDGSKEFSLGEWSCLQVV
LELIDSKQQERYWCPPLLHRAAIAFLHALWQDRRDSAMLVLRTKPKFWENLTNPLFGILA
PPSETSELSVLDTCALIMKIICLEIYYVVKGSLDQSLKDTLRKFSSEKRFAYWSGYVKSL
AHHVAETEGTSCASLTEYQMLISAWRMLLIISTSHADIMHLTDSAVHQQLFLDVLSGTKA
LLLVPMSVSCLQLGSMLCTLLLILLRQWKSELNSVDKIINSLTQILEGVLQADQQMMEKT
KARVFSALITVLQMKEMKVSEIPQYSQLVMSVCETIQDEVIALFDQTRHNLTSGDSADDK
DSMETDDVSRVKHKDQRDGVCVLGLHLAKELCEIDEDGDYWLQVTRKVPVLPTTFTALEI
SLRVKQNLHFTEASLHLLFTLAKTQQGAAAVAGAGVTQSVCLPLLSVYQLSSNGTIQTPA
SSRKSLDAPSWPGVYRLSMSLMERLLKTLRYNFLTEALDFVGVHQERILQCLNAVRTVQS
LACLEEADHTVGFILQLSNFMKEWHFHLPQLMRDMQVNLCYLCQACTSLLHSRKMLQHYL
QTKNGDSLPSGVTPRVQRTSQTSSRHPNPESEAAEQKALRTVQYSLLKILSKSLAALRHF
TPDLCQILLDQSLDLAEYNVLFVLSFTTPAFDSDVAPSFGTLLATVNVALNMLGELDKKK
EPFPQAVGLNTQEGTKTLKSLLMFTMENCFYLLISQAVRYLKDPAVHPRDKQRMKQELSS
ELSTLLSSLSRYFRRGGPSSPASGVLPSPQGKSASKFGSEGQEPLIQLVQAFVRHVQR
NT seq
5217 nt
NT seq
+upstream
nt +downstream
nt
atggcggctggcgggctgtgcgcgaggagtagcagagaactgtggaccattctgctgggc
agatcagctttgagggaaacagctcagattgcagcagagttgaacaaacattggcagagg
ctactagaggggctctcatactacaagtctcccagttcaagttcagcagaaaaagtaaaa
gctgacaaagatgtggctgctccgctgaaggaactaggcttaagggtcagcaagttcttg
ggtctggatgaagaacagagtgtacagttgctacagtgttatcttcaggaagattacaga
ggcaccagggactcactgaagactgttctgcaggatgaaagacagagtcaggctctgatg
ctgaagctggctgactattactgtgaagaaaggatttgcattctgcgctgtgtcctccac
ctccttacctattttcaggatgagaggcacccctacatggcacaatactcccagtgtgtt
gaaaagttggaaaaggaactggttcctaattacaggaaacagtttgaagagctgtacaaa
gcagaagctcctacttgggaaacgcatggaaatctcatgacagagcgccaggtatcccgc
tggtttgtgcagtgcctccgtgagcaatccatgcttttggaagtcatctttctttactat
gcttactttgagatggcacctgatgaactgttggcatttgccaggatgttcagagatcag
ggatttggctctagacagaccaataggcacttggtagatgaaagcatggatcatctggtg
gatcgtattggctacttcagtgctcttattcttgtggagggcatggaaattgactccctg
catgaacgtgctttggatgatagaacagaagaacataagttagccaataatgggcacgtt
caccagcaggaaatggaccgtctactgctgacattaggggatgtttcgcatcatgcccct
gttctcttggcctgggctttgcttcgccatacaataagcccagaagagtcaacacatata
atcaggcgaatggggagtactgcaattcagcttaacgtgttccagtatctgaccaaactt
ctccgatcactaagcagtggggggaagaattgtactgccagcaccgcttgcatgtgcatt
tatgggctgctttcctttgtcttgacctcactggagttacgtacactaggcaatcagcag
gatataattgatgctgcgtgtgaagttctagcagcttccagcattccccagctcttctgg
aggacagagccaactgcaggtcttggcattatcctggacagtgtgtgtggaatgttcccc
catcatctctctcctctccttcagctactccaagcccttgtgtcagataaatctactgca
aaaaaggtgtatagcttcctggataaaatgtccttctacattgagttgtacaagaacaaa
ccccctgatgtgatttcacatgaagatggcaccctttggcgaaagcaggcaccaaagctc
ctctatcctctggggctgggtcagacaaacttgcgaatacctcagggaacagtgggccaa
gtaattctggaagaccgggggtacctggtacgatgggaatattcctacagcagctggaca
ttgttcacttgcgagattgagatgctgctccacgttgtatcaactgcagatgtgattcag
cattgccagagggtcaagccagtcattgacctggtacacaaggtcatcagtactgatgtg
tcagtagcggactgtcttctcccaatcacatcgcggatctacatgctgttgcaaaggtta
acaactgtgatctctccccctgtggatgttattgcatcctgtgtcaattgtttgactgta
cttgcttctcggatgccagccaaggtttggactgaccttcaccatacagggttcttaccg
tttgttgctaatccagtttccagtatgagtcgcatgattagtgctgagggaatgaatgca
ggaggttatggcaacctgttgatgagtatagaacagcctcagggcgagtactgtgtcacc
atctcctttctacacttgatcactactcttgtccgtggacagcttggcagcacacagagc
caagggctgatgccatgtatcgtgtttgtattgaaggagatgctgccaaactaccacaaa
tggcgctataactcccatggagtgagagagcgaattgggtgtctgatcctgcagctgatc
catgctattttgaatttgtgccctgaaatggatcctcatagcagcagtgcccccagcctt
cagtctttatgcattttcagcctggctaacacagaagcagggcaggctgtcattaacatc
atgggcattggtgtggacaccattgatatggtaatggcctcacagtccagtagtgatgag
tcactgggccagggccagctgctgatccagacggttaagttggcattctcagtcactaat
aatgtcatccggttgaaacctccttctagtgtggtatccccacttgaacaggctctcaca
cagcatggtgctcatgggaacaatttgattgctgtcttggccaaatacatctaccacagg
catgacccagcactaccacgccttgccatccagctgcttaaacgattggctacggttgct
cctatgtctgtgtatgcctgccttggcagtgatgctgctgctatccgtgatgctttcctg
actcgtcttcagagtaagattgaggacatgcgcattaaagtcatgatcttggaattcctc
acagttgctgtagagacgcaacctgggcttattgagttgttcctgaacctggaagtgaaa
gatggggatgatgggtcaaaggaattcagcttgggggaatggagttgcctccaggtggtc
ctggagctgatagactctaagcagcaggaaagatattggtgccctcccctcttgcaccgt
gctgccattgcgttcctacacgctctgtggcaggaccgtcgggacagtgctatgcttgtt
ctgcggaccaagcccaagttttgggaaaatttaaccaaccccctgtttgggatccttgct
cccccttcagaaacatcagagctcagtgtcttggacacctgtgccttaatcatgaaaatc
atctgcctggagatctactatgtagtcaagggctcactggaccagtccctaaaagatacc
ttgaggaaattctctagcgaaaagcgctttgcttactggtcaggatatgtgaagtcactg
gcacatcatgtggcagagacagagggtaccagctgtgcctccctgacagaatatcaaatg
ctgatttcagcctggcggatgctgctgatcatctctaccagtcacgcagatataatgcat
ctgactgattctgcagtccatcagcagctgtttctggatgtgctaagtggaaccaaggct
ttactgctggttcccatgtcagtatcctgcctgcagctgggatctatgctatgcaccctt
cttctgattctgctcagacagtggaaaagtgaattgaattctgtggataaaatcataaac
tccttgacgcagattttggagggagtattgcaggcggatcagcagatgatggagaagacc
aaggccagagtgttctctgctctcatcactgtcctgcagatgaaagagatgaaagtgagt
gagatcccacagtactcccagttggtgatgagtgtgtgtgagacaatccaggatgaagta
attgcgttgtttgatcagacgaggcacaacttgacttctggagactcagcagatgacaag
gacagtatggaaacagatgatgtctcccgagttaaacacaaggaccagcgagatggggtc
tgtgttctgggcctgcatctggcaaaggaactctgtgaaatagatgaagatggagattac
tggctgcaagttactagaaaggtccctgtacttcccactactttcacagccttggaaatc
agcctgagagtcaagcagaaccttcatttcacggaggcctcattgcatctactctttacc
ttagccaagacacaacagggagctgcagctgtggctggagcaggtgtcacgcagagtgtc
tgcctgcccctcctgagtgtatatcagcttagcagtaatggaacaattcagacgcctgcc
tcatcccggaaatctctggatgctccctcttggcctggggtctatcgtctctctatgtca
ttgatggagcgccttctgaagacgcttcggtacaacttcctgacagaggcactggacttt
gtgggtgtccatcaagagaggattctccaatgcctgaatgcagtacggactgtgcagagc
ttggcctgtctggaagaagctgatcacactgttggcttcattcttcagctctccaatttt
atgaaagagtggcatttccacctgccacagctcatgagggacatgcaggtgaacttgtgt
tacctgtgccaagcctgtacttcccttctgcatagccgcaaaatgcttcagcactatcta
cagacaaaaaatggggactcccttccctcaggtgtgacacctcgagtgcagcgcacctct
cagacctcctccaggcatccaaaccctgaatcagaggctgcagagcagaaggccctgcgc
acagtgcagtacagtctcctgaaaatccttagcaaatccctggctgccctgcgccacttc
actcctgacctctgccagatcctccttgatcagtcactggaccttgctgagtacaatgtg
ctctttgttctgagtttcaccacaccagcctttgattcagatgtcgctccctcctttggg
accctcctggccacagtcaacgtggctcttaacatgctgggagagctggataagaagaag
gagcccttccctcaagctgtagggctgaatacgcaagaagggaccaaaactcttaagtcc
ctgctcatgtttacaatggaaaactgtttctacctgctcatctcccaggctgttcggtat
ttgaaggatccagctgtgcatccacgagacaagcagcgaatgaagcaggagctcagttcg
gagctgagtacgctgctctccagcctgtctcgttacttccgccgtggtggtccttcttct
cctgccagcggggtccttccttccccccagggaaagtctgcctccaagtttggttctgag
gggcaggagcctttgatccaactggttcaagcctttgtcagacatgtgcagagatag
DBGET
integrated database retrieval system
