Gavialis gangeticus (Gharial): 109292983 Help Entry 109292983         CDS       T07453                                  Symbol SETX Name (RefSeq) probable helicase senataxin   KO K10706   ATP-dependent RNA/DNA helicase, senataxin [EC:5.6.2.5 5.6.2.3] Organism ggn  Gavialis gangeticus (Gharial) Brite KEGG Orthology (KO) [BR:ggn00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:ggn03021]     109292983 (SETX) Enzymes [BR:ggn01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.3  DNA 5'-3' helicase      109292983 (SETX)     5.6.2.5  RNA 5'-3' helicase      109292983 (SETX) Transcription machinery [BR:ggn03021]  Eukaryotic type   RNA polymerase II system    Other transcription-related factors     Transcription termination factor      109292983 (SETX) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  AAA_11 AAA_12 AAA_19 AAA_30 UvrD-helicase Viral_helicase1 SLFN-g3_helicase AAA_22 AAA_16 ResIII Helicase_RecD TniB nSTAND3 Motif Other DBs NCBI-GeneID:  109292983 NCBI-ProteinID:  XP_019366255 LinkDB All DBs Position Unknown AA seq 2851 aa AA seqDB search MSICRWCTPGASCTTDFLSNYASKRLPPEDLAAASDDLCYCLECVVEYHKARDEVPSLHE TLWEMETSRLIAHMEKSMKEEIEEDDELFIVDENGETQLSGYTGPDFENNLRVPLLEILK YPYLLLHKRIGELCVEALCKMEQANSSFQVFEKHPGIYLLLVHPNEVIRRWAILMARNLG KVDRDDYYDLQEVLTCLFKVIELGLFDSPDIYCSSVIEKGKLILLPSHLYDSANYKNYWL GICMLLTVLEEQAMDSLLLGPDKQNDFMQSILHTMEKQTDDDNADPFWPALHCFMVILDQ LGSKVWGQLIDPVQAFQTIINNVSYNNEIQNIRNSSRRPKTEPESEYGEDMVTCSQIVYN YNTEKPKKDAGWKTAICPDYCPNMYEDMQTLANVLQSDIGQDMRVHNSTFLWFIPFVQSL MDLKDLGVAYIVEVIHHLCSEIKAVLNERVQQCDKVSEFFILILVSIIELHRNKKCLHLL WISSQEWVEAMVKCSKLPNVAFMRHGEKTPAISSQSFNSVQYACVQLIRSLLREGYQIGQ QTLCKQYLDKLNLLLRGNISLGWHLSSRETQELQTCLKQVIKSIKDKSTSSSFLLENSLI CTTSSAVPMKQEKGKSDDRCKMKTHPKDDFSPSFSSACRRDEVCPQSPSPRRGDAWEEEY KIPSAYNSYATTDCFLTNVKKELSGSAVEHEGQTSFVTTDKYRDIQKNENNPQVENYAKN STLLNQVCSPDLHCSDLKSCGVLEANCKTGARLPACLTAQPCITSEVICNSNEKDVSLSL NACSSFKVDDNKLSNLKTNVQKGDLATKLLQLMKSSPHLKKNKANDAPNSGADQPQSRPE SVHAKEDRSKDLGVNVACEGEMPISCHTPKGPESQEGRCLDGIVEINSLSAKQEKNNAQL EFSSFFKKEVNLPKNEVGGDDDNHIPCTAIIGNLPKKISHAGRSSSLSKCLLNKDLNAES SDQEQSNFGNLHPRQDACKEQIVSKLHMDAISVGVSIPPISSGEGGRPSNTPQISPHSIK RESEERPLTISRYFKREGVLERKNESTEVIACDLANRISGSRTLTDSQLDRDLHKLSLAA YTKSVNFSLDSSQEILPQHCLPDIMRKVKGAVRSSNGPSNETSFDTDCPNNQVIIISDSS SDDEKKIVIEKQTGKIDESICPEKQPLTSACVSDGVSKKEQMKSHSSPLPYEEYESQYFE FETEDDVFSVWQDSQMDDKNVNQVREQMPSASSSSSNNLQLEDETNEWGYDTDYISDDVI EQAAKDAEKQISSVFYQKKVSIAEIKSELTSQEPAIKRNAADQVESSYTRPVAKHGIKKT SLTELRTSTSKTSLAKKLAVKKGSASPSKSLAKSKVARAACRSPRKMNLKTTQSKKLPQA RCKNTEPCRSTPAVVPPKKVRQCPKPTSAAEKLGLKKAPRKAFELSQRSLESMAELRNYG RVAGAVTVPQKQKTILIDPQNLRVKNNKKMLASQDLQFLRQTRPKQEGRERNRVGSSGSR SKRIVKRADPTAAIQQPTAFDLASASRTSQRTAELVGCLSTRDKIQMRKSCSSEREEVQP VPMFKMPASAESTSKTEGNNTAIPALPYFPSPLTAEGKSESAEKDCIVKATSLLPPQCQE ANLKENMFKLNENDDDDLFLTQSDPVDMEMCSQLENIIILPSKEPLEMEVNAAESLLQND PSNIVMCKYKDCIEKVEKTGEYCSKHSLTDSSDHLFVKPLPPKIAKPPTTKIFNSNSSSR NASLSKDLENSSRLPLVSKNKSNAVKPAASKPMNPKAVSSENRVFKTPSLNSILRPQNSS NVLRAQNMQTKAVSNFQGWLASQTCVGQEKRVSYFPRSNTLVTVQRDPTIFVKEVLKWNY EIFANFGSFGPPNNLLQAIMASVPVKFQGYNDYFDTFFPLMMLNAFETLAQEWQENQKAK EKNAYHLHLKKFSADLNQAEFTVYIRERDLVKQLHPKEEDLIFLVVHEKQNPLAEESEKD CRPVRHVGHVTRFSRTHFTERGQNEQHVVCRLFVQTRGNLSSYINQQVKCEVVSSLVTTQ RKFRGLLLLGRSPLAKAIIHPNYNDFCPRDLTTASERTTSYYKEYNEDQKKAIETAYAMV KQHPGLPRICLIHGPPGTGKSKTIVGLLFRILNEKSEKENPAQNMNAKIKRNRVLVCAPS NAAVDELMKKIILEFKEKCQNIKSPLGNCGDKNLVRLGPQKSISTDVLRFSLDSQVSYRM NRGHSGRDQDLHKRKEALDRQLDMLSRQRAMDRCEKREKSQKLDDEIGRLSKERQELASQ LKEVRGRPQEVQASIILESHIVCCTLSTSGGFLLESAFRRQGLDPFSCVIVDEAGQACEV ETLIPLIHRCSKLVLVGDPKQLPPTVISMKAQDYGYDQSLMARLHKHLEEQVQQNIIGKL PVVQLTVQYRMHPDICLFPSNYVYGKTLKTDRATEESRCSSDWPFQPYLVFDVADGHEKR DKDSFANPQEVKLVVELIKTIKEKRKDTGSRNIGIITPYNAQKKIIQQELDREFGKDRAG EVDTVDGFQGRQKDCIIVTCVRANSAHGSIGFLASLQRLNVTITRAKLSLFILGRLKTLM ENKDWNELIQDAQRRGAIIKTSDKTYKKDAAKILKFKPALPRPSPRCPSTALPEKATRGQ PCSGSDRQIDVTNKKDSNSSRRQCDSAGPLAQGSGGLKRPQESQHSDARGVTVPTEARAA VQPAVREKLQDPRLAKRSEATGKEQAFENGKPSPLRNPGMTSPRVSEASSAHRSQSSTVQ PSVSKADTSTKCSLSERQPDLPVRCSHIARQNHDKNASVTMREAGTKSEGDQKNKTEGNK DKTSLYAQRRASERSPEDTGFSSAKRRKISS NT seq 8556 nt NT seq  +upstreamnt  +downstreamnt atgagcatatgtcgttggtgtacgcccggtgcttcctgcaccactgacttcctgagcaac tatgcttccaaacggttgccccctgaagatcttgcagcagccagcgatgatctttgttac tgcctggagtgtgtggttgaataccacaaggcaagggatgaagtgccttccttgcatgag acactgtgggagatggaaacctcccgtcttattgcccacatggagaagtccatgaaggaa gaaattgaagaggacgatgaattgtttatagtagacgagaatggggaaacacagctgtct ggttatactggcccagattttgagaacaacctgcgagtacctcttctagaaatactgaaa tatccatatttgctactacataagcgcatcggtgagctgtgtgttgaggctctctgtaaa atggagcaagctaacagctcctttcaggtctttgagaaacatccagggatttatctactc ttggtacaccccaatgaagtgattcgtcggtgggccatcctgatggcaagaaatttgggg aaggttgacagggatgattactatgatttgcaagaagtgttgacttgtttgtttaaagtc attgagctggggctttttgatagtcctgatatttattgttcttcagtgatagagaaagga aagctcattcttcttccatcccatttgtatgattctgccaactacaagaactactggtta ggtatctgtatgttactaacagtgctggaagaacaagcgatggattctttgttgctgggc cccgacaagcagaatgatttcatgcagtctatacttcacaccatggagaaacaaacagat gatgataatgctgatcccttctggccagcgctgcactgtttcatggtgattttggatcaa cttggttctaaagtgtggggtcaactgattgatccagtccaggcttttcaaactataatc aacaatgtgagctacaacaacgaaatacaaaatatacgcaatagctctaggagacccaaa actgaaccggagtcagagtacggggaggatatggttacttgtagccaaattgtctataat tacaacacggaaaagcccaaaaaggatgctggatggaagactgccatttgtccagattat tgccccaatatgtatgaagatatgcagacattggccaatgtgcttcagtctgatattggc caagatatgcgagtccataatagtacatttttgtggttcatcccttttgttcaatcactt atggatctcaaggacttgggagtagcctacattgtagaggtcattcaccatctctgctca gaaatcaaagccgttctcaatgaaagagttcagcagtgtgacaaagtctctgaatttttc atcctgattttagtgtcgattattgagctacatagaaataagaagtgtctgcatttgttg tggattagctcacaagagtgggtggaagcaatggtgaaatgttctaaactcccaaatgta gcatttatgcggcatggtgaaaaaacaccagcaatatcctctcagtcttttaactcagtg cagtatgcatgtgttcagttgatacgcagccttcttcgagaaggataccaaataggacag caaactctttgcaagcaatacctagacaaactaaatctgcttctccgtggaaacatctct ctgggttggcacctgagcagccgggaaacccaagaattacaaacctgtttaaagcaggta ataaaaagtataaaggacaaatccacaagttcttcattccttttggagaacagcttaatc tgtacaacttcatctgctgttcctatgaagcaagagaaagggaaatctgatgacagatgt aaaatgaagacacatcccaaggatgacttcagcccatcattttcttcagcatgtaggaga gatgaagtatgtccccagagtccttccccgagaagaggagatgcttgggaagaggaatat aaaataccatctgcctacaattcctatgcaactaccgactgctttttgacaaatgttaaa aaagaactcagtgggtcagctgtggagcatgaaggtcaaactagctttgtaacaacagac aaatacagggatatccagaaaaatgaaaataacccccaagtagagaactatgccaagaat agtaccttacttaatcaggtgtgcagcccagatctccactgttctgatttaaaaagctgt ggggtgttggaagccaattgtaaaacaggagccaggttgccagcgtgtctgactgctcag ccttgtattacttctgaagtcatttgcaactcaaatgaaaaagatgtcagtctctccctt aatgcctgctcaagttttaaggtagatgacaataaactcagcaatttgaaaaccaatgta cagaaaggtgatttggccacaaaattattgcagttaatgaagtcatcaccacatttgaag aaaaacaaagcaaatgatgcgccaaattcaggagcagaccaaccacagtctcgtcctgag agcgtgcatgcaaaagaagatcgtagcaaagatctgggagtgaatgttgcgtgtgaaggt gaaatgccgattagttgtcatactccaaaaggccctgaaagtcaggagggcagatgcctg gatggtattgttgagatcaattctctctctgctaagcaagaaaaaaataatgcacaacta gagttttcaagtttctttaaaaaagaggttaatttgcctaaaaatgaagtgggtggtgat gatgataaccatattccatgtacagcgattataggtaacttgccaaaaaagatatcccat gcaggaagatcaagttctttgtcaaagtgtctgttaaataaagacttgaatgcagagtct tcagaccaagagcagtctaattttggcaatttacatccaaggcaagatgcctgcaaagaa caaattgtgagcaaactacacatggatgcaatttcagtgggtgttagtattccacctata tctagtggtgaaggggggaggcctagtaatacccctcaaatcagtccacactcgattaag agagaatcagaagagaggccattaacaatttccaggtattttaaaagagaaggggttttg gagagaaaaaacgagagtacagaagtgattgcatgtgatttagcgaataggatttctgga tctaggaccttaacagactctcagctcgatagagaccttcacaaactatctttagctgcc tataccaaaagtgtcaacttttctcttgattcgagccaagaaatcttaccacagcattgt ctgcctgacataatgaggaaagtaaaaggtgctgttagatcgtctaatggcccaagtaat gagacctcatttgatacagattgtcccaacaatcaagtcattatcatttcagattcatct tctgatgatgaaaaaaaaatagttattgagaaacaaactggaaaaatagatgagagcata tgtccagaaaagcagcctttaacatctgcctgtgtttctgatggtgtgagtaagaaagaa cagatgaagagtcatagctccccattgccatacgaggaatatgaatctcagtattttgaa tttgaaactgaagatgatgtcttttcagtttggcaagattctcagatggatgacaaaaac gtgaatcaagtccgtgagcagatgccttcagcaagcagctcttcttcaaataatttacag ttggaagatgagacaaatgaatggggctatgatacagattacatcagcgatgatgtcatt gaacaagcagccaaggatgctgaaaagcagataagttctgttttttatcagaagaaagtt agtatagctgaaataaaatccgagttaactagtcaggaacctgctataaagagaaatgca gcagatcaagtggagagttcttacacgcgtcctgttgctaaacatggtataaaaaaaaca agcctgacagaactcagaacatctacatcaaaaacatcattagctaagaagctggctgtt aaaaaaggcagtgcaagtccaagtaaaagtttagcaaaatccaaagtggcaagagcagct tgcaggagtcctagaaaaatgaatcttaaaactacacaaagcaaaaaattgcctcaggcc cgttgtaaaaatactgaaccctgcaggtcaacccctgccgtagttcctccaaagaaagtt cgccagtgtcctaaaccaacgtcagctgcagaaaaacttggtttgaaaaaggcaccccgc aaagcttttgagttatctcagcggtctttagagagtatggccgaactgcgtaactatggc agagttgctggagcagttacggttccacagaaacaaaaaactatattaattgatccccag aatcttcgtgtcaaaaataataaaaaaatgctggcttcccaagatctgcagtttttaagg cagacaaggcccaaacaagagggcagagagagaaatcgggttggaagttctgggagtaga agcaaaagaatagttaaaagggcagacccgacggctgctatacagcaacctacagctttt gacttggcttctgcttcaagaaccagtcaaagaacagctgagctggttggttgtctttct acccgggacaaaatacagatgaggaaaagttgctcatctgagagagaggaagtgcagcct gtacctatgtttaaaatgcctgcctctgcagagtccacctctaaaacagaaggcaacaat acagcaattcctgctttgccatattttccttcccctttaactgcagagggcaaaagtgaa tccgcagaaaaagactgcattgtcaaggccacctccttgttaccacctcagtgtcaggag gcaaatttaaaagagaacatgtttaaattgaatgaaaatgatgacgatgacttattttta actcagtcagatcctgtggatatggaaatgtgttcccaactggaaaacattattatactt cctagtaaagagccactagagatggaagtaaatgctgctgaaagcctgttgcagaatgat ccttccaatattgtgatgtgtaagtacaaagactgtatagagaaggtggaaaaaacaggg gagtattgtagtaagcattctcttactgattcatcagatcatctctttgtcaagcctctg ccaccaaagattgccaaacctcctactaccaaaattttcaactcaaactcttcttcgcgg aatgccagtctcagtaaggatcttgaaaatagttcaagacttcccctggtttcaaaaaac aaatcgaatgcagtaaaacctgcagcatccaagccaatgaatccaaaagctgtatcatca gagaatcgggtgttcaagactccaagtttgaacagtattcttcggccccagaattccagc aatgttctccgggcccagaacatgcagaccaaagctgtttcaaatttccagggttggctt gcatctcagacttgtgtagggcaagaaaaacgggtctcttacttcccacggtcaaatacc cttgtcactgtgcagcgtgatcctactatttttgttaaagaagtcctgaaatggaattat gaaatatttgccaactttggcagttttggacctccaaataacctccttcaggcaatcatg gcatctgttcctgtcaagttccaaggatacaatgactattttgacacatttttccccttg atgatgctaaatgcctttgaaacgctggcacaagaatggcaagaaaatcagaaggctaaa gagaagaatgcttatcatttgcatttaaaaaagttctctgctgacttgaatcaagctgaa tttacagtttacattcgggaaagggatctcgtcaagcagcttcatccaaaggaggaagat ttgatttttctggttgtgcatgaaaagcaaaaccccttggcagaggaaagcgagaaggat tgccgtcctgtgcgtcatgttggtcacgtgacccgcttctcccgtacccatttcacggaa cgaggtcaaaatgagcagcatgttgtttgtcgtctttttgtccaaacacgaggcaatttg tcatcctacataaatcagcaggtgaaatgtgaagtggtcagctctctagttactacacaa cgaaagttcagaggtctgctactgttgggtaggagtcctcttgctaaagccatcatacat ccaaattataatgacttctgtccaagagatttgaccacagcttccgagagaactacatca tactataaagaatacaatgaagatcagaagaaagctattgaaacagcttatgcgatggtg aagcagcacccaggccttcctagaatttgcctgattcatggaccacctggtacaggaaaa tcaaaaactattgttggactgctgttccgtatcttaaatgagaagtctgagaaggagaat ccagctcaaaatatgaatgccaagatcaaacgaaatcgtgttctggtttgtgcaccatcc aatgctgctgttgacgagctcatgaaaaagatcatccttgaattcaaagaaaaatgtcaa aatataaaaagtcctttggggaactgtggagataaaaacctagtgcgactgggtccacaa aaatcaatcagcactgatgtcctgagattcagcttggatagtcaagttagctacagaatg aaccggggtcactctggccgtgatcaagatcttcacaagagaaaagaagctctggatcgt cagctggacatgctctctcgtcagcgagccatggataggtgtgaaaagagggagaagagt caaaagttggatgatgaaattggcagactttcaaaagagaggcaagagctcgcttctcaa ctcaaggaggttcgaggccgtccacaggaagtgcaggctagcatcattttggagtcccac atcgtctgctgcacattgagcacaagtggaggttttctgctggagtctgcttttcgacga caaggacttgaccctttcagttgcgtcattgtggatgaggcaggacaagcatgtgaggtt gaaactctcattccactgatacatcgctgtagtaaacttgtccttgttggagatcccaag caactccctcccactgtaatatccatgaaagctcaggattatggctatgatcagtctttg atggctcgcctgcacaaacatctggaagaacaggtgcagcaaaatattatagggaagcta ccagttgtgcagctgactgtgcaatacaggatgcatcctgacatctgcctcttcccatcc aactatgtttatgggaagactctgaagactgacagagcaacagaggagagccgatgttct tcagattggccatttcagccctacctggtctttgatgtagcggatgggcatgagaaacgg gataaagattcttttgcaaatccccaggaagtgaagctggtggtggaattaattaaaaca ataaaagaaaaaagaaaggatactggttctcgtaacattggaataatcaccccttacaat gcacagaaaaagatcattcaacaagaattggacagagaatttggaaaagacagagccgga gaagttgacacagtggatgggttccagggccgacagaaagactgcattatagtgacatgt gtccgagcgaacagtgcacatgggtcgattgggtttctggcaagtcttcagcgtctgaac gttaccatcacccgagccaaattgagcctctttatacttggaagattaaaaacactcatg gaaaataaagactggaatgagctgatacaggatgctcagaggaggggtgccatcattaag acgagtgacaagacctataagaaggatgctgctaaaatcctaaagttcaagccagcattg ccacggccatctccccgttgtcccagtactgcactgcctgaaaaggctactcgagggcag ccttgttcaggcagtgacaggcagattgatgtcaccaacaaaaaagacagcaacagttct aggagacagtgtgacagtgctggacccttggcacaaggtagcggagggctcaaacggcca caagaatctcagcattcagacgccaggggtgtcacggtacccacagaagcgagggctgca gtgcagcctgctgttcgagagaaactacaggatccaagactggctaagagaagtgaagca acagggaaggagcaggccttcgagaacggtaagccgtcacctctgagaaacccaggaatg acatcaccaagggtctctgaggcatcttcagctcacaggagtcagagcagcactgtacag ccctctgtctccaaggcagacacttctaccaagtgcagcctgtctgagagacagccagac ttgcctgtcaggtgttcccacatagctaggcagaaccatgacaagaatgcttctgtgacc atgagagaggcaggaactaaaagtgaaggagaccaaaaaaataagactgaggggaacaaa gacaagaccagcctctatgcacaaaggagagcatcggaacggtcaccggaggacacaggc ttcagtagtgccaagcggagaaagatctcctcttaa

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