Gavialis gangeticus (Gharial): 109293399
Help
Entry
109293399 CDS
T07453
Symbol
PRPF8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
ggn
Gavialis gangeticus (Gharial)
Pathway
ggn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ggn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109293399 (PRPF8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ggn03041
]
109293399 (PRPF8)
Spliceosome [BR:
ggn03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
109293399 (PRPF8)
Complex C
U5 SnRNP specific factors
109293399 (PRPF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
109293399
NCBI-ProteinID:
XP_019366838
LinkDB
All DBs
Position
Unknown
AA seq
2335 aa
AA seq
DB search
MAAVFPYRGGCAPVPSPLAPLPDYMSEEKLQEKARKWQQLQAKRYAEKRKFGFVDAQKED
MPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVPVLY
HITGAISFVNEIPWVIEPVYIAQWGSMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYAD
NILDVEPLEAIQLELDPEEDAPVLDWFYDHQPLKDNRKYVNGSTYQRWQFTLPMMSTLYR
LANQLLTDLVDDNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFNDIN
KIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLINPIS
HRHSVKSQEPLPDDDEEFELPEFVEPFLKDTPLYTDNTANGIALLWAPRPFNLRSGRTRR
ALDIPLVKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFKATK
FFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRF
GNAFHLCREVLRLTKLVVDSHVQYRLGNVDAFQLADGLQYIFAHVGQLTGMYRYKYKLMR
QIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGITPLLERWLGNLLARQF
EGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSEAWRCW
KANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLGRLT
RLYLKAEQERQHNYLKDGPYITAEEAVAVYTTTVHWLESRRFSPIPFPPLSYKHDTKLLI
LALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMD
LYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQGIN
NLQDVWETSEGECNVMLESRFEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYK
DMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDIATE
VAHPIRLFCRYIDRIHIFFRFTADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDARM
RLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRILPKC
RTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFTKIV
NKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK
ELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWESEFI
DSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRT
DFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEG
LFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGI
FMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPRKSY
KMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIERYA
RAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGSKPLIQQAMAKIMKANPAL
YVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTT
KPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQ
IIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLFNLY
DDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWIKVE
VQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQSQLT
ATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDIKET
GYTYILPKNVLKKFICISDLRAQIAGYLYGVSPPDNPQVKEIRCIVMVPQWGTHQTVHLP
GQLPQHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKVMADNPSWDGEKTIIITCSFTP
GSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQGSWN
YNFMGVRHDPNMKYELQLANPKEFYHEVHRPSHFLNFALLQEGEVYSADREDLYA
NT seq
7008 nt
NT seq
+upstream
nt +downstream
nt
atggccgccgtgttcccgtaccgcgggggctgcgcgcccgtgcccagcccgctggcgccg
ctgcccgactacatgtcagaggagaagttgcaggagaaagcccgcaagtggcagcagctg
caggcgaagcgctatgcggagaagaggaagttcgggttcgtggacgcgcagaaggaggat
atgccgcccgagcacgtacgcaagatcatccgcgaccacggcgacatgaccaacaggaag
ttccggcacgacaagcgggtctacctgggggccctcaagtacatgcctcacgctgtgctg
aagctgctggagaacatgccgatgccgtgggagcagatccgcgacgtgccggtgctgtac
cacatcacgggcgccatctccttcgtgaatgagatcccgtgggtcatcgagcccgtgtac
atcgcgcagtgggggtccatgtggatcatgatgagacgcgagaagagagaccggcgtcac
ttcaaaaggatgcggttccctcccttcgacgatgaggagccgcctctcgactatgctgac
aacatcttggatgtggagccgctggaagccattcagctggagctggacccagaggaagat
gctcctgtcctggactggttctatgaccaccagcccctgaaagacaacaggaagtacgtg
aatggttccacataccagcgctggcagttcactctccccatgatgtccaccttataccgc
ctggccaatcagctgttgacggatcttgtggatgacaactacttctatctgtttgacctg
aaggccttcttcacttccaaggccttgaacatggctattcctgggggtccgaagtttgag
cctcttgttcgagacattaacttgcaggatgaagactggaatgaattcaatgacatcaac
aaaatcatcattagacagcccatcaggacagagtacaaaattgctttcccgtacctatac
aacaacctgccacatcatgtgcatctgacctggtatcatacgccaaatgtggtcttcatt
aaaacagaagatccggacttgccagctttctactttgatccattgatcaatccaatctct
cacaggcactctgtcaagagccaggagccattgcctgatgatgatgaagagtttgagtta
ccagaatttgtggaacctttcctgaaagacacaccactgtatacagacaacacggccaat
ggcattgcgctgctgtgggcccctcggcccttcaacctgagatctggcaggacgcgcaga
gctcttgacatcccgctggtcaagaactggtatcgggagcattgcccagctgggcagcca
gtgaaagtgagggtctcctaccagaaactgctgaagtactacgttctgaatgcgctcaag
cacagaccccccaaagctcagaagaagaggtacctgtttcgctccttcaaggccacaaaa
ttcttccagtcaacgaagctggactgggtagaagtagggctgcaggtttgccgccaggga
tacaacatgctgaacttgctgatccacaggaagaacctcaactatctccatctggactac
aacttcaatctcaaaccagtcaagaccctcaccaccaaggaaaggaagaagtctcgtttt
ggtaatgctttccatctgtgcagagaggtgctgcgtctgaccaaattggtggtggatagc
catgtccagtacagactgggaaacgtggatgcgttccagctggctgacggcttgcagtat
atctttgcccatgtgggacagctgacggggatgtacagatacaagtacaaactgatgagg
caaattcgtatgtgcaaggacctgaagcatctcatttactacaggtttaatacggggcct
gtggggaagggtcctggctgtggcttctgggccccaggctggcgagtgtggctgttcttc
atgagaggcatcactccactgttggagcggtggctggggaacctgctggccaggcagttt
gagggtcgtcactcaaagggcgttgcgaagaccgtcaccaagcagcgtgtggagtcccac
tttgacctggagctgagagccgcagttatgcacgacatcctggacatgatgccagaaggg
atcaagcagaacaaagccaggaccatcttgcagcacttgagcgaagcttggcgctgctgg
aaggccaacatcccttggaaggttcctgggctgccaactcccattgaaaacatgatcctg
agatatgtgaaggcaaaggctgactggtggactaacactgcgcactacaatcgagagcgg
atccgccggggtgccactgtggacaagactgtgtgtaagaagaacctgggccggctaacc
aggctgtacctgaaagctgagcaggagaggcagcataactacctgaaggacggtccctac
atcactgcagaggaggcagttgctgtatataccaccacagtgcactggctggaaagtagg
agattttcacccattccattccccccgctctcctacaagcatgacaccaagctgctcatc
ctggccctggagaggctgaaggaagcctacagtgtgaaatcccgtctgaatcagtcacag
agagaagagctgggtctgatcgagcaggcctacgataacccccatgaagctctgtccaga
atcaagcgacaccttctcacccagagagctttcaaggaggtgggcattgagttcatggac
ctctacagccacttggttcctgtgtacgatgttgagccgctggagaagattacagatgcc
tatctggatcagtacttgtggtatgaggctgacaagcgaagactcttccctccgtggatc
aaaccagctgacactgaacctcccccactgttggtgtacaagtggtgccaaggcattaat
aatctgcaggatgtctgggaaacaagtgagggtgaatgcaacgtgatgctggagtctcga
tttgagaagatgtatgagaagattgacttgacactgctcaacaggctcctgcgtctcatt
gttgatcataacattgctgactacatgacagccaagaacaacgtggtgatcaactacaag
gacatgaatcacaccaattcctatgggattattcggggcctgcagtttgcttccttcatt
gttcagtattacgggctggtgatggacctcctggtgctggggcttcaccgagctagtgag
atggccggcccaccccagatgccaaacgacttcctcagcttccaagacattgccacagag
gtggcccatcccatccgcctcttctgcagatacattgaccgaattcacatctttttcagg
tttacggcagatgaggcgagggacttgatccagcgctacctgaccgagcatcccgacccc
aacaatgagaacattgtgggttacaacaacaagaagtgctggccccgtgacgcccgcatg
aggcttatgaagcatgatgtgaacctgggccgtgctgtgttctgggacatcaagaaccgc
ctgcctcgctcagtcactaccgtgcagtgggagaatagctttgtttcagtctatagcaaa
gacaatcccaatctcctgtttaacatgtgtggctttgagtgccgaatcctgcccaaatgc
cgcaccagctatgaggagttcacgcacaaggacggcgtgtggaacttacagaatgaggtg
accaaggaacgcactgctcagtgcttcctgcgtgtggatgatgagtcgatgcagaggttt
cacaaccgtgtgcggcagatcctcatggcttctggctccacgaccttcactaagatcgtg
aacaaatggaacacagccctgatcggcctgatgacctatttccgggaggctgttgtgaac
actcaggagctgcttgacctgctggtgaagtgtgagaacaagattcagacccggatcaag
atcggcctcaactccaagatgccgagccgcttcccccctgtggtgttctacacccccaag
gagctgggtgggctgggcatgctgtccatgggccatgtcctcatcccccagtctgacctg
aggtggtccaagcagacagacgtgggcatcactcacttccgctcaggaatgagccatgag
gaggaccagctgattccaaatctgtaccgctacatccagccgtgggagagcgagttcatt
gattcacagagggtgtgggcagaatatgcactcaagaggcaggaagctattgcccagaac
aggcgtctgacactggaggatctggaggactcgtgggacaggggaattcctcgcattaac
actcttttccagaaagaccgtcacactctagcttatgataaaggctggagggtcaggaca
gacttcaaacagtaccaggtcctgaaacagaacccgttttggtggactcatcagcgccat
gacgggaagctttggaacttgaacaactaccgcacagacatgatccaggcactgggagga
gtggaggggatcctggagcacaccctcttcaaggggacctacttccccacctgggagggt
cttttctgggagaaggcgagtggctttgaggagtccatgaagtggaagaagctgacgaat
gcccaaagatcgggtttgaatcagatccccaacagaaggttcaccttgtggtggtctccg
accattaacagagctaacgtctatgtcggtttccaggtgcaactggatttgactggaatc
ttcatgcacggcaagatccccacgctgaagatttccctcattcagatcttccgagcccac
ttgtggcagaagatccatgagagcattgtgatggatttgtgtcaggtgtttgatcaggag
ctggatgccctcgagattgagacggtgcagaaggagaccatccaccccaggaagtcctat
aagatgaactcctcctgtgcagatatcctcctcttcgcctcctacaaatggaacgtgtca
cggccatcactgcttgcggactccaaggatgtgatggacagcaccaccactcaaaaatac
tggattgacatccagctgcgctggggagattatgactcccatgatatcgagcgctatgcg
agagccaagttcttggattacaccacagacaacatgagtatctacccttctcccactggt
gtgcttattgccattgacttggcctacaacctgcacagtgcttatggaaattggttcccc
gggagcaagcccctgatccagcaggccatggccaagatcatgaaggccaaccctgccctg
tacgtgctgagagagcgaatccgcaaggggctgcagctgtactcctcagagcccacggag
ccctacctctcctcccagaactatggggaactcttctctaaccagatcatctggtttgtg
gatgacaccaatgtgtacagagtcaccatccacaaaacctttgaaggaaacttgaccaca
aagcccatcaatggggccattttcatcttcaaccccaggacagggcagcttttcctgaag
atcattcacacctctgtatgggcaggacagaagcgtctgggccagctggcaaagtggaag
actgctgaagaagtggctgccctgattcgctccctccctgtggaggagcagcccaagcag
atcatcgtcaccaggaagggcatgctggaccctctcgaggtgcacttgctagacttcccc
aacattgtgatcaaaggctcggagctgcagctgcccttccaggcctgcctgaaagtggag
aagtttggggacctcatcctgaaggctactgagccgcagatggtgctgttcaacctctat
gacgactggctgaaaacaatctcctcgtacacggccttctcacgtctgattctgattctc
cgggcactgcacgtgaacaacgaccgagccaaagtgatcctgaagccagacaagacgacc
ataacagagccacaccacatatggcccaccctgacagatgaggagtggatcaaggtggag
gtgcagctcaaggacctgatccttgcagactatggcaagaaaaacaatgtgaatgtggcg
tccctgacgcagtcagaaattcgagatatcatccttggcatggagatctctgccccctcg
cagcagcggcagcagattgctgagattgagaagcaaaccaaggaacagtcgcagctcaca
gccacgcagacccgcaccgtcaacaagcatggcgacgagatcatcacttccacgaccagc
aactacgaaacccagaccttctcctccaagacagagtggcgagtcagagcgatctctgct
gccaatctccacttgagaacaaaccacatctatgtctcatctgatgacatcaaggaaaca
ggctacacctacatcctccccaagaacgtgctgaagaagttcatctgcatctctgacctg
cgggcccagattgcagggtacctgtatggagtgagccctccagataacccccaagtgaag
gagatccggtgcattgtgatggtgccccagtggggaactcaccagactgtgcatctccca
ggccagctgccacagcatgagtacctcaaggaaatggagccccttgggtggattcacacg
cagccaaacgagtcgcctcagctctccccgcaggatgtcaccacccatgccaaggtcatg
gctgacaacccctcttgggacggggagaagaccatcatcattacctgcagcttcaccccc
ggctcctgcacactgacggcctacaagctgactcccagcggctacgagtggggcaggcag
aacacggacaagggcaacaaccccaagggctacctgccttcccactatgagcgggtgcag
atgctgctgtcggaccgcttcctcggcttcttcatggtgccagcgcagggctcctggaac
tacaacttcatgggtgtccggcacgaccccaacatgaagtacgagctgcagctggcaaac
cccaaggagttctaccacgaggtccatcgcccctcacacttcctcaacttcgctctgctc
caggaaggggaggtctactcggcagatagagaggatctctacgcgtag
DBGET
integrated database retrieval system
