Gavialis gangeticus (Gharial): 109293400
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Entry
109293400 CDS
T07453
Symbol
SCARF1
Name
(RefSeq) scavenger receptor class F member 1 isoform X1
KO
K24318
scavenger receptor class F member 1
Organism
ggn
Gavialis gangeticus (Gharial)
Pathway
ggn04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
ggn00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
109293400 (SCARF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ggn04131
]
109293400 (SCARF1)
Membrane trafficking [BR:
ggn04131
]
Endocytosis
Phagocytosis
Scavenger receptors
109293400 (SCARF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EGF_laminin
EGF_TEN
EGF_Teneurin
EGF_2
EGF_PEAR1L
Motif
Other DBs
NCBI-GeneID:
109293400
NCBI-ProteinID:
XP_019366839
LinkDB
All DBs
Position
Unknown
AA seq
1085 aa
AA seq
DB search
MLTGQEKDVSCASAAAAPGAVAERQGLETCQPGPCSPCWLPGGSGAGGGLGLSHSSIVPR
RPDARGRAVPAWPVGDGSTQGCAQGEGKGMGRMEEPGGARPPLCPAQRSRVEAQAEALGS
SGLRRPCGHLAWASSEAKTWGKPVRAQPASLPPWREAFSSPPSRVSSGSRKEETQSQGEE
AQSQGEEAGEPEETGRLDGEHCAGQPGMARLWVLFCLQLLPWAWGSAQELDAAGRNVCAD
ERVPTGLACCPGWRQEGRECPAALCEGEDACAADEVCVKPGVCRCKPGFFGAHCSSRCPE
QYWGPDCKQSCLCHPHGKCNPATGHCTCYANRWGPLCQFPCPCGPHGRCHPLTGACLCEP
GWWAPTCKRQCQCNLSGSRCDPATGQCLCAQGWWGRRCGFPCSCHLSPCAQDSGKCECKV
GSWGPSCQHQCDCLHGSCSPLTGSCTCSPGYQGRSCRDPCPAGHYGPQCRHSCGHCKRSQ
PCSPTDGLCLACEPGWNGTLCNQPCLPGHHGENCSQACPQCRGGETCHPETGTCQDCDPG
WTGPSCDAPCPDGTFGDRCQLPCLVCINGRCDPVSGECVCQAGYWGSSCNETCRDGFFGV
NCSSPCPCAGGPCHPLSGDCAFGSRYQGALIAGVLVPLLLLLLCVACCCCCGTGPVEARD
RAAVADADVLSRMKHHVQGVLANLSSMLPCFSLGGYKLPRVTVSHHDAEIPFNPSFIEQP
SAAWASDSSFSSFDSDDDGPAYSVPALAVEDVPAGSEPQEGGSPGNELPDATAFNSEEVS
QPFIIPRTSSIAKAKRPSVSFAEGTKFGPQCRSGSVEMPSASRKPKASWGLPKPPLADAD
ESAQPGGRPNDYENAEPIATGEDGHRPSPRSTPGGRRRVVPSTRHVAQRVEALEAASKLE
QNITTIYMTVGTARRGTRHSGGGQGSGEGPVQAVLKRLGSFQRGKRASKEEPKVRRGPES
IQKPPRRALGQERVSTPTPPQQGEGTKGLGLGTAESPAEHQQHGPGQRPSPIPAPPGLWA
ADAQGEDEAERSEGPEQAGKLEANGQAAAEEEEPKYENVTPYHSSLPRSPSGEPPATTAE
HEASP
NT seq
3258 nt
NT seq
+upstream
nt +downstream
nt
atgctcacggggcaggaaaaagatgtttcctgtgcatccgctgctgcggcgccaggagcg
gtggctgaacggcaggggctggagacatgccagcccggtccctgcagcccgtgctggctt
ccaggggggagtggggctggtggaggcctaggcctttcccacagctccatcgtgccccgg
aggccggatgcacgaggccgtgccgtgcctgcctggcccgtgggggatggcagcacccag
ggctgtgcccagggtgagggaaaaggtatggggcgcatggaggagccaggcggcgcaagg
cctcccttgtgcccggctcagcgcagcagggtggaggctcaggccgaggcactgggaagc
tctggcctccgccggccgtgtgggcatctggcatgggccagcagtgaggcaaagacctgg
ggaaagcccgtgcgagcccagcctgcctccctgcccccttggcgcgaggctttctcatct
cctccctcccgcgtttcctcaggaagcagaaaggaggaaactcaaagccagggagaggaa
gctcaaagccagggagaggaagcaggcgaaccggaggagacgggcaggctggacggcgag
cactgcgctgggcagcccggcatggcgcggctgtgggtgctcttctgcctccagctcctg
ccctgggcctggggctctgcgcaggagctggacgcagccgggaggaacgtgtgcgcggac
gagagggttcccacgggcctggcgtgctgccctggctggaggcaggaaggcagggagtgc
ccggctgcactgtgcgagggcgaggacgcctgcgcggctgacgaggtgtgtgtgaagccg
ggggtctgccgctgcaagcctggctttttcggggcccactgcagctcccgctgccctgag
cagtactggggccctgactgcaagcagagctgtctgtgccacccgcacgggaagtgcaac
cccgccaccggccactgcacgtgctatgccaatcgctggggacctctctgccagttccca
tgcccgtgcgggcctcacggtcgctgccaccccctcaccggagcttgcctgtgcgagccg
ggctggtgggcaccgacctgcaagcggcagtgtcagtgcaacctgtctggctcccgctgc
gaccccgccaccgggcagtgcctctgtgcccaaggctggtggggcaggcggtgcggcttt
ccgtgctcctgccacctctccccgtgcgctcaggactcagggaagtgcgagtgcaaggtg
gggtcctggggcccgtcatgccagcaccagtgcgactgcctgcacgggagctgcagccct
ctcactgggtcctgcacctgcagccctggctaccagggcaggagctgcagggacccctgc
ccagccgggcactatggaccgcagtgcaggcacagctgcgggcactgcaagcggagccag
ccctgctcgcccacggatgggttgtgcctggcgtgcgagccgggctggaacgggaccctg
tgcaaccagccctgcctgcctggacaccacggggagaactgttcccaggcctgtccccag
tgccggggtggggagacctgccacccggagaccggcacctgccaggactgcgatcccggc
tggacaggacccagctgcgatgcgccctgcccggatggcacgtttggggacaggtgccag
ctcccgtgcctggtgtgcatcaatgggcgctgcgacccggtgtctggggagtgcgtctgc
caggctggctactggggcagcagctgcaatgagacctgtcgggacgggttctttggcgtg
aactgctcgtccccctgcccgtgtgcggggggcccctgccacccgctctccggggactgt
gcattcgggtctcgctaccagggcgccctgattgcaggcgtgcttgtcccactgctgctt
ctgctgctgtgcgtcgcctgctgctgctgctgcgggaccggcccagtggaggcgagggac
agggcagccgtagccgacgcggacgtgctgtcccgaatgaagcaccacgtgcagggtgtg
ctggccaacctcagctccatgctgccttgcttctcgctggggggctacaagctcccccgg
gtcacagtctcgcaccacgacgccgagattcccttcaaccccagcttcatcgagcagccc
tctgcggcctgggcctcggacagctccttctcctccttcgactcggacgacgatggcccg
gcctactccgtccctgcccttgccgtggaagacgtgcccgcaggctctgagcctcaggaa
ggcggctccccagggaacgagttgcccgacgcaacggcctttaactcggaagaggtctcc
cagccattcatcatcccccgcacgtccagcattgccaaggccaagaggccctcggtgtcg
tttgccgaaggcactaagtttggccctcagtgcagaagcggctctgtggagatgcccagc
gcctcccggaagcccaaggcctcttggggtctccccaagccccccctggccgacgcggat
gagagtgcccagccaggtgggcggcccaacgactacgaaaacgcagagcccattgccacg
ggggaagacggccaccggccctcgccccggagcaccccagggggccggaggagggtggtg
cccagcacccggcatgtggcccagagggtggaggcccttgaggcagcttcgaagctggag
cagaacatcacgacgatttacatgacggtgggcacggcgaggaggggcacccggcacagc
gggggtggccaagggagcggagaggggccggtgcaggcggttctcaagcggctgggcagt
ttccagagagggaaaagggcctccaaggaggagcccaaagtgcgcagaggccccgagagc
atccagaagcctccccggcgggccctgggccaggagagggtctccacccccacccctccc
cagcagggagagggcaccaagggcctaggcctgggcaccgctgagtcccccgcagagcac
cagcagcacggtcctgggcagagaccgtctcccatccccgcaccgcctgggctttgggcc
gcggacgcccagggggaagacgaggccgagaggagcgaggggcccgagcaagctggaaag
ctagaagccaacgggcaggcggcagctgaggaagaggagccgaagtacgagaacgtgact
ccctatcacagcagcctgcctcgcagcccctcgggcgagccccccgccaccaccgcagaa
catgaggccagcccctga
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