Gavialis gangeticus (Gharial): 109293525
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Entry
109293525 CDS
T07453
Symbol
LIG3
Name
(RefSeq) LOW QUALITY PROTEIN: DNA ligase 3
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
ggn
Gavialis gangeticus (Gharial)
Pathway
ggn03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ggn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
109293525 (LIG3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ggn03400
]
109293525 (LIG3)
Enzymes [BR:
ggn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
109293525 (LIG3)
DNA repair and recombination proteins [BR:
ggn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
109293525 (LIG3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
Cytadhesin_P30
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
109293525
NCBI-ProteinID:
XP_019367074
LinkDB
All DBs
Position
Unknown
AA seq
906 aa
AA seq
DB search
MAEQRYCVDYAKRGTAGCKKCKEKILKGMVRIGKVVPNPFTESGGDMKEWYHVKCMFEKL
GRARATTKKIEDITDLEGWEELQDAEKDLINQLISEHTSKSASTPKKKATVQAKLSPSGQ
ITSPKKDPGAAPNPSPKKFSGFTAKPGSSDNTPANSSHKSTLSSKKCDPKHKDCLLREFR
KLCAMVADKPGYNVKTQIIQDFLQKGTGGDGFHGDLYLTIKLLLPGVIKIVYNLNDKQIV
KLFSRIFNCSQDEMVRDLEQGDVSETVRIFFEESRSCPPAAKSLLTIQEVDEFLIGLSKL
TKEDDQQTLLQGITRRCTGNDLKCIIRLIKHDLKMNAGAKHVLDALDPNAYEAFKASRNL
QDVVERVLRNQQEAEKQPGLKRILRVQASLMTPVQPMLAEACKSIEYAMKKCPNGMYAEI
KYDGERVQVHKNGDHFSYFSRSLKPVLAHKVAHFKDFIPRAFPGGQSMILDSEVLLIDNK
TGKPLPFGTLGVHKKAAFQDANVCLFVFDCIYFNDVSLMDRPLSERRKFLHDNMVEIPXP
DPLFRDEACHKSFRSGRYDNRVIREGLEGLVLKDIESTYEPGKRHWLKVKKDYLNEGAMA
DTADLVVLGAFYGQGSKGGMMSIFLMGCYDPKTEKWCTVTKCSGGHDDATLARLQKELDM
VKISKDPSKIPSWLKINKLYYPDFIVPDPKKAPVWEITGAEFSKAEAHTADGISIRFPRC
TRIRDDKDWKTATNLLQLKELYQLSKEKSDFSVVAGEEEVSTAGSSGENDGNSGSSTPHN
TPKTPPRKSPAKTKKSEGNNLVYTTPEKKAEDKRGEKRKAAELDDNGKKILLDIFTGVRL
YLPPSVENFSKIRRYFVAYDGDLVQEFDTASATHVIGDLEENPGAKRVSPSWIWECIRKR
RLVAPC
NT seq
2721 nt
NT seq
+upstream
nt +downstream
nt
atggcggagcagcggtactgcgtggactacgccaagcgcggcacggccggctgcaagaag
tgcaaggagaagatcctgaagggcatggtccgcattgggaaggttgtgcccaaccccttc
accgagtcgggcggcgacatgaaggagtggtaccacgtcaagtgcatgttcgagaagctg
gggcgggctcgtgccaccaccaagaagatcgaggatatcacagacctggaggggtgggag
gagctgcaagacgccgagaaagacctcatcaaccagcttatctcggagcacacgtccaag
tcggcaagcacacctaagaagaaggcaacagtccaggctaagttgtcccccagtgggcag
ataacttcccccaagaaagatccaggggctgctcctaatccatctccaaagaaattctct
ggtttcacagctaaaccaggcagttctgacaacacccctgcaaattcttcccacaagtct
actttgtcttcaaagaagtgtgacccaaagcacaaggattgtttgttgcgggaattcaga
aaattgtgcgccatggttgctgacaagcctggctataacgtgaaaacacagatcatccag
gactttctgcagaaagggactgggggagatggctttcatggtgacttgtacctgaccatt
aagctgttgttgccgggtgtcattaaaattgtttacaacttgaatgacaagcagattgta
aagttgttcagcagaattttcaactgcagccaggatgaaatggtccgggacctggagcag
ggagatgtttcagaaacagtccgcatcttttttgaggagagcaggtcctgtcctccagct
gccaaaagtctcctcacaatccaggaagtggacgagttcctaatcggactgtcaaagctt
acaaaggaggatgaccagcaaactctgcttcagggtatcactcgcaggtgcacgggcaat
gacctgaaatgtatcatcaggcttataaagcatgatttgaaaatgaatgctggtgcaaaa
catgtgttagatgctttggatccaaatgcctatgaggccttcaaagcatcgcgcaatctt
caggatgttgtggagcgtgtgctgagaaaccaacaggaggcagagaagcagccgggtcta
aagcgaatcctccgtgtgcaggcctctctgatgacccctgttcagcccatgctggctgaa
gcctgcaagtcaatagaatatgccatgaagaagtgtccgaatgggatgtatgcagagatc
aaatatgatggggagcgagtgcaggtccacaagaatggagatcatttcagctacttcagc
cgaagcctcaagccagtccttgctcacaaagtggcccattttaaggacttcatccccaga
gcctttcctggtggacagagtatgatcttggattcagaagttcttctcattgacaacaaa
acaggcaaaccactcccttttgggacccttggagtgcacaagaaagctgctttccaagat
gccaatgtctgcttgtttgtatttgattgcatctacttcaatgatgtcagcctgatggac
aggccattgagtgagcgtcgtaagtttctccatgataacatggttgaaatccccnagccg
gatcctcttttcagagatgaagcatgtcacaaaagcttcagatctggcagatatgataat
agagtcatccgtgagggactggaaggactggtgctgaaggatatagagagcacgtatgag
ccaggaaaacgtcactggctgaaagtgaaaaaggactatcttaatgaaggtgccatggct
gacacggcagacctggtggttctgggagctttctacggacaaggcagtaaaggtggaatg
atgtcaatttttttaatgggctgctatgatcccaagactgaaaaatggtgtacagtgact
aagtgctctggtgggcatgatgatgccaccttagctcgcctgcagaaggagctggacatg
gtgaagatcagcaaggatcccagtaaaattccgagctggctaaaaataaataagctctac
tatccagatttcattgttccagacccaaagaaggccccagtgtgggagatcacaggtgcg
gagttctctaaagcagaagcccacactgcagatgggatttccattcgtttccctcgttgt
acccggatccgagatgacaaagactggaagacagccaccaatctccttcaactcaaggag
ctgtaccagctctccaaagagaagtctgatttcagtgtcgttgctggagaggaagaggta
tctacagctggcagcagtggagagaatgatggaaattcagggtcttccacaccacacaat
acccctaaaactcccccaaggaagtcacctgcaaaaaccaagaagtctgaaggtaacaat
ttagtctatacgacccctgaaaagaaagcagaggataaacgaggggagaagcggaaagca
gccgagctggatgacaatgggaagaagatattgctggacatatttacaggggtgaggctg
tacctaccaccctccgtggagaacttcagcaaaatccggcggtactttgtggcatatgat
ggggaccttgtgcaagagtttgatacagcttctgcaacgcatgtgataggggaccttgag
gagaaccctggagctaagcgtgtgtcacccagttggatctgggagtgtatccgtaagcgg
agactagtagccccctgctaa
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