KEGG   Gavialis gangeticus (Gharial): 109294067
Entry
109294067         CDS       T07453                                 
Symbol
HDAC1
Name
(RefSeq) histone deacetylase 1 isoform X1
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
ggn  Gavialis gangeticus (Gharial)
Pathway
ggn03082  ATP-dependent chromatin remodeling
ggn03083  Polycomb repressive complex
ggn04110  Cell cycle
ggn04330  Notch signaling pathway
ggn04350  TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:ggn00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    109294067 (HDAC1)
   03083 Polycomb repressive complex
    109294067 (HDAC1)
 09130 Environmental Information Processing
  09132 Signal transduction
   04330 Notch signaling pathway
    109294067 (HDAC1)
   04350 TGF-beta signaling pathway
    109294067 (HDAC1)
 09140 Cellular Processes
  09143 Cell growth and death
   04110 Cell cycle
    109294067 (HDAC1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:ggn03036]
    109294067 (HDAC1)
Enzymes [BR:ggn01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     109294067 (HDAC1)
Chromosome and associated proteins [BR:ggn03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     109294067 (HDAC1)
   HDAC complexes
    Sin3A-HDAC complex
     109294067 (HDAC1)
    BRAF-HDAC complex
     109294067 (HDAC1)
    REST complex
     109294067 (HDAC1)
    SHIP complex
     109294067 (HDAC1)
    MiDAC complex
     109294067 (HDAC1)
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     109294067 (HDAC1)
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    109294067 (HDAC1)
  Chromatin remodeling factors
   NuRD complex
    109294067 (HDAC1)
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 109294067
NCBI-ProteinID: XP_019367821
LinkDB
Position
Unknown
AA seq 418 aa
MALTQGTKRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKAN
AEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSAGGSVAS
AVKLNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHG
DGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAI
FKPVISKVMETFQPSAVALQCGSDSLSGDRLGCFNLTIKGHAKCVEFVKSFNLPMLMLGG
GGYTIRNVARCWTYETAVALDTEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLE
KIKQRLFENLRMLPHAPGVQMQPIPEDAVQEDSGDEDEEDPDKRISSRCLPVGMSWLV
NT seq 1257 nt   +upstreamnt  +downstreamnt
atggcgctgacgcaggggaccaagcggaaagtctgttattactatgatggggatgttgga
aactactattatggccagggccatccaatgaagccccacaggatccgaatgacccataac
ctcctgctgaactatggcctttacagaaaaatggagatctatcgtccccacaaagcgaat
gcagaagaaatgaccaagtaccatagtgatgactacattaaatttctgagatctatacgc
ccagataatatgtctgagtacagcaagcagatgcaaagattcaacgttggggaagattgc
cccgtgtttgatggattgtttgagttttgtcagctgtctgcagggggatctgttgccagt
gctgtgaagctgaacaaacaacaaacagatattgctgtgaattgggcaggaggccttcac
catgctaagaaatcagaggcttctggtttctgttatgtcaacgatatagtcttagccatc
ttggaactgctaaagtaccaccagagagtgctgtatattgacattgatattcaccatgga
gatggtgtggaggaggccttttataccacagatcgtgtcatgaccgtgtccttccataaa
tatggagaatacttcccaggaacaggggacctacgggatattggtgcaggcaaaggcaaa
tattatgctgtcaactatcccctccgggacgggattgacgatgagtcctacgaggcaata
ttcaagccggtgatatctaaagtgatggagacgttccagcccagtgcagttgccctgcag
tgtggatcagattctctgtcaggggacaggttgggctgttttaatctgaccatcaaaggt
catgccaagtgtgtggagtttgtaaagagttttaatttgcccatgctgatgttaggagga
ggtggctacacaatccgcaatgtggctagatgctggacctatgagacggccgtagctttg
gacactgaaattccaaatgagcttccgtataatgactattttgaatactttggaccagac
tttaaactccacatcagtccttcaaatatgaccaatcagaacaccaatgagtatcttgag
aagattaagcagcgtctctttgagaacttacgcatgcttcctcatgcccctggtgtccag
atgcagccaattcctgaggatgctgttcaggaagatagtggagatgaagatgaagaagat
cctgacaaacgcatttcaagtaggtgtctgcctgtaggtatgagttggcttgtctga

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