Gavialis gangeticus (Gharial): 109294489
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Entry
109294489 CDS
T07453
Symbol
PMS2
Name
(RefSeq) mismatch repair endonuclease PMS2
KO
K10858
DNA mismatch repair protein PMS2
Organism
ggn
Gavialis gangeticus (Gharial)
Pathway
ggn03430
Mismatch repair
ggn03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ggn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
109294489 (PMS2)
03460 Fanconi anemia pathway
109294489 (PMS2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ggn03400
]
109294489 (PMS2)
DNA repair and recombination proteins [BR:
ggn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
109294489 (PMS2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutL_C
DNA_mis_repair
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
109294489
NCBI-ProteinID:
XP_019368422
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All DBs
Position
Unknown
AA seq
874 aa
AA seq
DB search
MEMEACPPPAAAIRPLDRPSVHRICSGQVVLSVGTAVKELLENSLDAGATHVDIKLKDYG
AELIEVSDNGCGVEEENFEGLTLKHYTSKIQDFSDLICVETFGFRGEALSSLCALSDVTI
FTCHKSAKVGTRLVFDHNGKITQKTPYPRQQGTTVSIQQLFYTLPVRHKELQRNIKKEYA
KMVQILQAYCIISTGVRITCTNQVGQGKKHTVVCTPGSSSLKENIGAVFGQKQLQSLISF
AQLLPSEAVCEEYGLSSVDMPHSLYTITGFISHCDHGVGRSTTERQFFFINQRPCDPTKV
SKLVNEVYHMYNKHQYPFIVLNICVDSECVDINVTPDKRQILLQEEKVLLAILKTSLMDM
FGSDVNKLNINQKLLDIAGNLKKILPEETEKPKAETLLGSASQNPSRELKRGMTITRLRE
SFSLHQMTESSFGSPKNVKQQHSPPRQRHLSDLSTSSPVNSQKSDPNKETECWSAVDLNT
HTIIGTNLKKLENDTDSGHGSTSAESNVRFSTPEVGSCLSSESTDASPDEEFHISDENLQ
SGRLETVTCAEESLECDVQLSGNVCKLNQVSDQKERRGFLPNSFPNMKRFKSKKEDLKGT
TCPELKNAQNPAPGLHADVLIKVQKKTVTLEFSMNTLAERVRKLTQLQQKNTEMLNYRRF
KAKISPGENKAAEDELRKEIRKEMFANMEIIGQFNLGFIIAKLKSDLFIIDQHATDEKYN
FEMLQQHTVLQGQKLIAPQSLNLTAVNETILIENLEIFRKNGFDFVIDENAPVTQRVKLI
SLPTSKNWTFGPQDIEELIFMLSDCPGVMCRPSRVRQMFASRACRKSVMIGTALNVNEMK
KLITHMGEIEHPWNCPHGRPTMRHIASLDLISPK
NT seq
2625 nt
NT seq
+upstream
nt +downstream
nt
atggagatggaggcctgtccgcctcccgccgcggccatccggcccctggaccgcccgtcc
gtgcaccgcatctgctcggggcaggtcgtgctgagcgtcggcaccgccgtgaaggagctg
ctggagaacagcctggacgccggcgccacgcacgtcgatataaaacttaaagattatgga
gcagaacttatagaagtttcagataatggttgtggtgtagaagaagaaaacttcgagggg
ttgactttgaaacattatacttctaagatacaagatttctctgatctaatatgtgtcgaa
acatttggatttcgaggtgaagctctgagttcactgtgtgcattaagtgatgttaccatt
tttacttgtcacaagtctgcaaaagttggaactcgtctggtatttgatcacaatgggaaa
attactcagaaaactccttacccacgacagcaaggaacaactgttagcatacagcaatta
ttttatactctgccagtacggcataaagaacttcaaagaaacattaagaaggagtatgca
aaaatggtccagatactgcaagcatattgtatcatttcaacgggagttcgaattacctgt
accaatcaagttggtcaagggaaaaaacacactgtggtatgcacccctgggagttcaagt
ctgaaggaaaacataggagcagtatttgggcaaaaacagttgcagagccttatttccttt
gctcagctacttcctagtgaagctgtttgtgaagaatatggcctcagctctgttgacatg
ccgcatagtctgtataccattacaggcttcatttcccattgtgatcatggcgttggaagg
agtacaacagagagacagttctttttcatcaatcagagaccatgtgatccaacaaaggtt
tccaagcttgtcaatgaagtttaccacatgtacaataaacaccaatatccatttattgtt
ctaaatatttgtgtagattctgaatgtgttgacatcaatgtaacacctgataagaggcaa
attttacttcaggaggagaaagttttgttagcaattttaaagacttctctgatggatatg
tttggtagtgatgttaataaacttaacatcaatcaaaagctgctggatattgcaggtaac
ttgaaaaaaatacttccagaagaaaccgaaaagcctaaggcagaaacattgcttggttct
gcatctcaaaatccaagcagggaattaaaaagagggatgactattaccagattaagggag
tcgttctcactccatcaaatgacagagagcagctttgggagccctaaaaatgtgaaacaa
caacacagcccccctaggcagagacatttgtcagatctttccacttcaagtcctgtaaac
agtcaaaaatctgacccgaacaaggagactgagtgctggagtgcagtggacttaaacaca
catacaattattggcacaaatttgaagaaattagaaaatgacactgattctggacatggt
agtacttctgcagaatcaaatgttaggtttagcactccggaagtaggtagctgcctcagc
agtgaaagtacagatgcttctcctgatgaagaattccatatatcagatgaaaatctccaa
agtgggcgtcttgaaaccgtaacctgtgctgaggaatcattggaatgtgatgtccagctt
tcaggaaatgtatgtaaattgaaccaagtgagtgatcagaaagaacggagagggttcctt
ccaaattctttcccaaatatgaagcgttttaaaagtaaaaaagaggacttaaagggaact
acctgtccagaactaaagaatgctcagaaccctgcgccaggactacatgctgatgtactg
ataaaagttcaaaagaaaactgtgacacttgagttctcaatgaacactttagcagaaaga
gtaagaaaacttactcagctccaacagaaaaatacagaaatgctgaattacagaagattt
aaggcaaaaattagtcctggagaaaataaggcagcagaggatgaattaagaaaagagata
cgtaaagagatgtttgcaaacatggaaattattggtcagttcaatttagggtttataatt
gccaagctaaagtctgacctcttcataattgaccaacatgctacagatgagaaatacaat
tttgagatgttacaacagcacaccgttcttcaaggtcagaagttgatagcgcctcaaagt
cttaatttaactgctgtaaatgaaactatattgatagaaaacttggagatattcagaaaa
aatggatttgattttgttattgatgaaaatgctcctgtaactcaaagggttaagctgatt
tctttgccaacaagcaaaaactggacttttggtcctcaggacatagaagagctgatcttt
atgctaagtgattgccctggagtcatgtgtaggccatccagagtcagacagatgtttgct
tctcgagcttgtagaaaatctgtgatgattgggactgcacttaatgtaaatgagatgaag
aaactgatcacccacatgggtgagattgagcatccttggaactgtcctcatggaaggcct
accatgaggcacatagccagtttagacttgatttctccaaaataa
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