Gavialis gangeticus (Gharial): 109294923
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Entry
109294923 CDS
T07453
Symbol
PTBP1
Name
(RefSeq) polypyrimidine tract-binding protein 1 isoform X1
KO
K13218
polypyrimidine tract-binding protein 1
Organism
ggn
Gavialis gangeticus (Gharial)
Brite
KEGG Orthology (KO) [BR:
ggn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ggn03019
]
109294923 (PTBP1)
03041 Spliceosome [BR:
ggn03041
]
109294923 (PTBP1)
Messenger RNA biogenesis [BR:
ggn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
109294923 (PTBP1)
Spliceosome [BR:
ggn03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
109294923 (PTBP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_5
RRM_1
RRM_8
RRM_occluded
RRM_PARP14_3
RRM_Nup35
Motif
Other DBs
NCBI-GeneID:
109294923
NCBI-ProteinID:
XP_019369058
LinkDB
All DBs
Position
Unknown
AA seq
557 aa
AA seq
DB search
MDGIVQDITVGTKRGSDELFSTCVTNGPFIMSSNSASAANGNDSKKFKGDSRSAGVPSRV
IHVRKLPSDVTEAEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTTVTPV
LRSQPIYIQFSNHKELKTDNSPNQARAQAALQAVNSVQSGNLALSASAAAVDAGMAMAGQ
SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPMSAQHAKLS
LDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFGAP
GIISASPYAGAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLTGA
GNSVLLVSNLNPERVTPQCLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHL
NGQKLHGKPIRITLSKHQTVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSA
TLHLSNIPPSITEEDLKMLFSSNGGMVKGFKFFQKDRKMALIQMGSVEEAIQSLIDLHNH
DLGENHHLRVSFSKSTI
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atggacggcattgtccaagatataacagttggtacaaagcggggatctgacgaactcttc
tctacttgtgttactaacggaccctttatcatgagcagcaactctgcttctgcagctaat
ggaaatgacagcaaaaaattcaaaggtgacagtagaagtgctggggtcccatcacgagta
atccatgtccgcaaactccccagtgacgtcacagaggcagaagtcatttctctgggctta
ccttttggcaaagtcaccaatcttctcatgctgaaaggaaaaaatcaggcttttatagaa
atgaacacagaggaagcagccaacaccatggtaaattactatactacagtcactccagtc
cttcgaagccagcccatctacattcagttctccaaccacaaggagctcaaaacggacaac
tctccaaaccaagcacgtgcccaggcagctctgcaagcagtgaattctgtccagtctgga
aacctggcactttcggcctctgctgcagcagtggatgcaggaatggcaatggctggtcag
agtcctgtcttgaggatcattgtagaaaaccttttctatcctgtgactttggatgtcctg
catcagattttttctaagtttggaacagtgctgaaaataattacattcaccaagaacaac
cagttccaggccctgttgcaatatgctgaccctatgagtgcacagcatgccaaactgtct
ttagatggacaaaatatctacaatgcctgttgcacactgcgtatcgacttctcaaaactc
acaagcctcaatgttaaatacaacaatgataagagcagagattacacacggccagatcta
ccttctggggatagtcagccctctcttgatcagactatggcagctgcttttggtgctcca
ggaataatctctgcttctccatatgcaggagctggttttcctcctacctttgcaattcct
caagctgcaggcttgtcagttccaaatgttcacggagcacttgctcctttggctatccca
tcagcagcagcagcagcggctgcagcaggacggattgccattcccggccttactggggct
gggaactccgttctgctggttagcaatctgaaccctgagagagttacaccccaatgcctc
tttattcttttcggcgtctatggtgatgtacaaagggtgaagatcttatttaataagaag
gagaatgccctagttcaaatggcagatggaaaccaggctcagcttgccatgagtcactta
aatggtcagaagcttcatgggaagcctatccgtatcacactgtccaagcatcagacagta
cagcttccccgcgagggacaggaagatcaagggttgactaaggactatggcaattctcct
ctccatcgtttcaagaaacctggctctaaaaacttccaaaatatcttcccaccttctgct
actcttcacctctcaaatatcccaccttcaataactgaagaagacctcaagatgctgttc
tcaagcaatggtggcatggtcaagggattcaaattcttccagaaggaccgtaagatggct
ctgatccagatgggctctgtggaagaagccattcagtcgctcattgacctccataatcat
gatcttggtgagaatcaccacctgcgtgtgtccttctcaaagtccaccatttag
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