Gavialis gangeticus (Gharial): 109295218
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Entry
109295218 CDS
T07453
Symbol
SOX13
Name
(RefSeq) transcription factor SOX-13
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
ggn
Gavialis gangeticus (Gharial)
Brite
KEGG Orthology (KO) [BR:
ggn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ggn03000
]
109295218 (SOX13)
Transcription factors [BR:
ggn03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
109295218 (SOX13)
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
PTPS
AAA_23
Motif
Other DBs
NCBI-GeneID:
109295218
NCBI-ProteinID:
XP_019369470
LinkDB
All DBs
Position
Unknown
AA seq
620 aa
AA seq
DB search
MSMRNPISPHLDLDGAGNMVNCAIKTEGKESCYESPKGAAAGPESHASSLHGAPPSLRDT
TDPRALPQESPSPGNDAIDSKSSTFEPAVGSQEKLDFNRNLKEVMPAIEKLLSSDWKERL
LGRNSMESKEVKGTQESLAEKELQLLVMINQLSTLRDQLLTAHSEQKNMAAMLFEKQQQQ
MELARQQQEQIAKQQQQLIQQQHKINLLQQQIQQVNMPYVMIPAFPPSHQSLPVAPDSQL
ALPIQPIPCKPASLSAVEYPVQLLHSPPPPSLKRPTSSSHLQMQESSQPLNLTAKPKGPE
LPSASSSPSLKMGSCQSLTPNHGATRDLQSSPSNLPLGFLGEGDAITKAIQDARQLLHGH
SGALEGSLSNPYRVKDHVGVDSSPAKERVEETCAHRLDEAMITCDMDGSRHFPESRNNNH
IKRPMNAFMVWAKDERRKILQAFPDMHNSSISKILGSRWKSMTNQEKQPYYEEQARLSRQ
HLEKYPDYKYKPRPKRTCIVEGKRLRVGEYKALMRNRRQDARQGFLIAPQSSQMQATSSD
VLYPRPVGLQLTPPLMEHYLPRGTDPNMPVIINTRSLKAQEADGAEDRHSVADGEMYRYS
EEEDSEGEDKSDGELVVLTD
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atgtccatgaggaaccccatctctccccatctggacctcgatggagccggcaacatggtg
aactgcgccatcaagacagaggggaaggagagctgctacgagtccccaaagggagcagct
gccggccccgagtcccatgccagcagcttgcacggagcaccgccatcactgagagacacc
actgacccccgggccctgccacaggaatccccgtcccccgggaacgacgcaatagactcc
aagagctccacgttcgagcctgccgtaggcagccaggaaaagttggacttcaatagaaac
ttgaaagaggttatgccagccattgagaagttactctccagtgactggaaggaaaggctt
ttgggaagaaatagcatggaatccaaagaggtgaaaggtacccaggagagcttagcggag
aaggagctgcagttacttgtcatgatcaaccagctctccacgctgagggaccagctcctg
acagcccattcagagcagaagaacatggcagccatgctctttgagaagcagcagcagcag
atggagctggcccggcagcagcaggaacagattgccaagcagcagcaacagctcattcag
cagcagcacaagattaacctgctgcagcagcagatccagcaggtcaacatgccctatgtc
atgattccagcctttcctcccagccatcagtcactcccagtggctccagactcccagcta
gcacttcccatccagcccatcccttgcaaaccagcttctctttctgcagtggagtaccca
gtgcagctactacacagccctcctccgccgtcactcaagagacccaccagctccagccac
ctccagatgcaggagtcttcacagcccctgaacctaacggccaagcccaaaggccctgag
ctccccagtgcctccagctctccgagcctgaagatgggcagctgccagtccctcacaccg
aatcacggggccacgcgggacctgcagtccagcccttccaacctgcccctggggtttctg
ggagagggggacgccatcaccaaagccatccaggatgcccggcagctcctgcacggccac
agcggggccttggagggctctctgagcaacccctacagagtgaaggaccacgtcggagtg
gactcctccccagctaaagagcgggtggaagagacctgtgcacacaggctggacgaggcc
atgataacctgtgacatggatggctcacggcacttccccgagtccaggaacaacaaccac
atcaagcggcccatgaacgccttcatggtctgggccaaggacgagcggcggaagatcctg
caggccttcccagatatgcacaactccagtatcagcaagatcctggggtcccggtggaag
tccatgacgaaccaggagaagcagccctattacgaggagcaggcacggctgagccggcag
cacctggagaagtacccagactacaagtacaagccgcgacccaagcgcacctgcatcgtg
gagggcaagcgacttcgcgtgggcgagtacaaggccttgatgaggaaccggaggcaggat
gccaggcagggcttcttgatagcaccccaaagcagccagatgcaagccacctcctcagat
gtcctgtacccgaggccagtgggtttgcagctgacgccaccgctgatggagcactacctg
ccccgcggcacagaccccaacatgcccgtcatcatcaacacacgcagcctcaaagcccag
gaggccgacggcgcggaggacaggcactcagttgcggatggcgagatgtaccggtacagc
gaggaggaggactccgagggcgaggacaagagcgatggggagctagtggtgctgacggac
tga
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