Gavialis gangeticus (Gharial): 109295672
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Entry
109295672 CDS
T07453
Symbol
CLP1
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
ggn
Gavialis gangeticus (Gharial)
Pathway
ggn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ggn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109295672 (CLP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ggn03019
]
109295672 (CLP1)
Enzymes [BR:
ggn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
109295672 (CLP1)
Messenger RNA biogenesis [BR:
ggn03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
109295672 (CLP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
AAA_18
MMR_HSR1
TniB
ATP_bind_1
AAA_16
AAA_22
CbiA
Sigma54_activat
nSTAND3
Motif
Other DBs
NCBI-GeneID:
109295672
NCBI-ProteinID:
XP_019370175
LinkDB
All DBs
Position
Unknown
AA seq
425 aa
AA seq
DB search
MAEETGDEKKQVAKFELERETELRFEVEASQTVQLELLTGMAEIFGTELTRNKKFTFDAG
AKVAVFTWHGCTVQLSGRTEVAYISKDTPMLLYLNTHTALEQMRRQAEREDERGPRVMVV
GPTDVGKSTVCRLLLNYAVRLGRRPTFVELDVGQGSVSIPGTMGALYIERPADVEEGFSL
QAPLVYHFGSTTPGTNIKLYNKITSRLADVFNQRCEVNRRASVSGCIINTCGWVKGSGYQ
ALVHAASAFEVDVVVVLDQERLYNELKRDLPHFVRTVLLPKSGGVVERSKDFRRECRDDR
IREYFYGFRGCFYPHAFDVKFSDVKIYKVGAPTIPDSCLPLGMSQEDNQLKLVPVTPGRD
MVHHLLSVSTADSPDENISETSVAGFIVVTGVDLERQVFTVLSPAPRPLPKNFLLIMDIR
FMDLK
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atggcagaggaaactggggatgagaaaaaacaggtggccaaatttgagctggagcgggag
acagagctccgcttcgaggtggaggcctcccagactgtccagctagagttgctgacgggc
atggcagagatctttggcacggagctgactcggaacaagaagttcacctttgacgctggc
gccaaggtggcagtgttcacctggcatggttgtacggtgcagctgagcggccgtacggaa
gtggcttacatctctaaggacaccccgatgctgctgtacctcaacacccacacggccctg
gaacagatgcgccggcaggcagagcgtgaggatgagcgggggccccgggtcatggtagtg
ggccctacggatgtgggcaagtcaactgtgtgccggctactgctgaactacgctgtgcgg
ctgggacgccgacccactttcgtggagctggatgtgggccaaggctcggtctctattcct
ggcaccatgggcgcactgtacattgagcggcctgcagatgtggaggagggcttctccctt
caggcccccctggtctatcattttggatccaccacgcctggcaccaacatcaaactgtat
aacaagatcacatctcgtctggctgatgtctttaaccagcgctgcgaggtcaaccgccgg
gcttcagtcagtggctgcatcatcaacacgtgtggctgggtgaagggctctgggtaccag
gcactggtacatgcggcctctgcctttgaggtggatgtggtggtagtgctggaccaggag
cgtctctacaatgaactgaagagggaccttcctcactttgtgcgcacagtgcttcttccc
aagtcaggtggtgtggtggaacgctccaaggacttccggcgggaatgccgggatgaccgt
atccgggagtacttctatggcttccggggctgcttctatcctcatgcctttgatgtcaag
ttctctgatgtcaagatatacaaggtgggtgcacccaccatccctgactcgtgcctgccc
ctcggcatgtcacaggaggacaatcagctcaagctggtgccagtgactccgggccgtgat
atggtacaccatctactgagtgtgagcacagctgatagccccgatgaaaacatctctgag
actagtgtggctggcttcattgtggtcactggtgtggacttggagcgccaggtcttcaca
gttctctcaccagcaccacgccccctgcccaaaaacttcctgctcattatggacatccgc
ttcatggacctcaaatag
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