Gavialis gangeticus (Gharial): 109296091
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Entry
109296091 CDS
T07453
Symbol
RTCB
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ggn
Gavialis gangeticus (Gharial)
Brite
KEGG Orthology (KO) [BR:
ggn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ggn03016
]
109296091 (RTCB)
Enzymes [BR:
ggn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
109296091 (RTCB)
Transfer RNA biogenesis [BR:
ggn03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
109296091 (RTCB)
Prokaryotic type
tRNA splicing ligases
109296091 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
109296091
NCBI-ProteinID:
XP_019370869
LinkDB
All DBs
Position
Unknown
AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLDKLDKNCWRIKKGFVPNMNVEGVFYVNDPLEKLMFEELRNACRGGGAG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMSDPEAVVSPGGVGFDI
NCGVRLLRTNLDECDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSRAKKRGLPQLGTLGAGNHYAEIQVVDDIYNE
YAARKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDMHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTDQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHAAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccggagctacaatgacgagctgcagtacctggacaagctcgacaagaattgctgg
cgcatcaagaagggtttcgtgcctaacatgaacgtggagggcgtcttctatgtcaacgac
ccgctggagaagctgatgtttgaggagctgcggaacgcctgccgcggcggcggtgctggt
ggtttcctgcctgccatgaaacaaattgggaatgtggctgcactacctggcattgtccat
agatccattgggcttcccgatgtccattctggctatgggtttgctattggcaacatggct
gcctttgatatgagtgacccagaggcagtggtgtcaccaggtggtgttggttttgacatc
aactgtggtgtccgcttactgcgtacgaatctggatgaatgtgatgtacagcctgtgaag
gaacagcttgctcaggccatgtttgaccatattcctgtgggtgtgggctccaagggtgtc
atccccatgaatgccaaggacttggaagaggccctggagatgggggtggactggtctctt
cgggaaggatatgcttgggcagaggacaaagagcactgtgaggaatatgggaggatgctg
caggctgatcctaataaggtctcttcaagagccaagaaaagggggctgcctcagctgggg
actctgggagcagggaaccattatgcagagatccaggttgtggatgacatctataatgag
tatgctgccaggaagatgggcattgaccacaagggacaagtgtgtgtaatgattcacagt
ggcagcagaggcctgggccaccaagttgctacagatgcattggtggccatggagaaagct
atgaaacgagacaagatcatagtgaatgatcgccagctggcatgtgccaggattgcttct
ccagagggacaggactatttaaaaggaatggctgcagctgggaactacgcatgggttaac
cgctcttccatgactttcctaactagacaggcctttgccaaagtcttcaacacgactcct
gatgaccttgacatgcatgtgatttatgatgtgtcacacaacattgccaaagtggagcaa
catgtggtggatggaaaagagcgaaccctgctggtgcatagaaaaggatccactagagct
ttcccccctcatcatcctctcattgctgttgattaccagctgactggacagcctgtgctg
attggtgggactatgggtacctgcagctatgttcttactggtacagatcaaggcatgacc
gagacctttggaaccacttgccatggagctggtcgtgcactatcccgagccaaatcccga
cgtaacttggacttccaggatgtgttagacaaactggctgacatgggcattgccattcgt
gttgcttctcccaaactggtcatggaggaagcaccagaatcctataagaatgtgacggat
gtggtgaatacgtgccatgctgctggcatcagcaagaaggctatcaaactgagacctatt
gctgttattaaaggatag
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