Gavialis gangeticus (Gharial): 109296757
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Entry
109296757 CDS
T07453
Symbol
MSH2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
ggn
Gavialis gangeticus (Gharial)
Pathway
ggn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ggn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
109296757 (MSH2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ggn03400
]
109296757 (MSH2)
DNA repair and recombination proteins [BR:
ggn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
109296757 (MSH2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_II
MutS_IV
MutS_I
AAA_27
Motif
Other DBs
NCBI-GeneID:
109296757
NCBI-ProteinID:
XP_019371855
LinkDB
All DBs
Position
Unknown
AA seq
937 aa
AA seq
DB search
MAAAEPPRDAPWPEGAGAEAAFVRAVLALPAKPDTTVRFLERGDYYTAHGADAQLAARRL
FRTRAVLRYLPGAPGNQKLESVVLSKMNFESFVRDLLLVCHYRVEVYKNRAGSKSTKEND
WYLAYKGSPGNLAQFEEILFGNNDMSTAIGVVGVKLSAAEGQRIIGVGYVDTTLRKLGVC
EFPDNDQFSNLEALLVQTGPKECVFPGGETAGDMGKVRQIIQRGGILITDRKKAEFTTKD
IVQDLNRLLKSKKEEQVNSAALPEMEKQVAISSLSAVIKYLELLSDESNFGQFELTTFDL
SQYMILDNAAVRALNLFQGSSENANSTQSLVGLLNKCRTPQGQRLVSQWIKQPLLDKNRI
EERLNLVETFVVDTELRQCLQEDLLRRFPDLNRLAKKFQRQAATLQDCYRMYQAINQLPN
VVQALEKHEGVHQMLLLTVFITPLHDIYSDFSKFQEMIETTLDMSKVENHEFLVKPSFDP
NLTELREKMNKIEESMQSCLKTAARELGLEASKSIKLESSAQLGHHFRITCKEEKVLRNN
AKYKILDTQKNGVKFTNSKLSSFNEEYLKYKEEYEEAQDAIVKEIINIASGYAEPIQTMN
DVIAQLDAVVSFAHVSSGAPVPYVRPVILEKGQGQIVLKGSRHPCIEVQDDVAFIPNDVT
FEKGKQMFHIITGPNMGGKSTYIRQAGVIVLMAQIGCFVPCDSAEVTIVDCILARVGAGD
SQLKGVSTFMAEMLETASILRTATENSLIIIDELGRGTSTYDGFGLAWAISEYIASKIHA
FCMFATHFHELTALAGQVPTVNNLHVTALTTDDTLTMLYRVKKGVCDQSFGIHVAELVAF
PKHVIESAKEKALELEEFQNIGEPKESEGEPAVKRCYREKQEGEKIIQDFVYQVKALPLT
DMSEEDIRTKLKQLKAGVLAKNNSFVNEVIARTKATS
NT seq
2814 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcggagcctccgcgggacgcgccgtggcctgagggtgcgggagccgaggcc
gcgttcgtgcgcgcggtgctggcgctgcccgcaaagcccgacaccaccgtgcgcttcctg
gagcgcggcgattactacacggcgcatggcgcggacgcgcagctggccgcccgccggctc
ttccgcacccgcgctgtcctccgctacctgcccggcgcgcccgggaatcagaaacttgag
agtgttgtacttagtaaaatgaactttgaatcatttgtgagagatctacttttggtttgt
cactacagagttgaagtttataagaatagggcgggcagcaaatctaccaaagagaatgac
tggtatttggcatacaagggctccccgggtaaccttgcccagtttgaggaaattctgttt
ggtaataatgacatgtcaactgccattggagttgtgggtgtgaagttgtctgctgccgag
gggcaaagaataattggagttgggtatgttgacacgacactgagaaagctgggtgtctgc
gagtttccggataatgaccagttctcaaacctggaagctttgctagttcagactggtccc
aaggaatgtgtgtttcctggaggggagacagctggagatatgggaaaagtgcgacagatc
attcagagaggaggaatcctgattacagatagaaaaaaggctgaattcacaacaaaagat
attgtgcaagaccttaatcgcttactgaaatcaaagaaggaagaacaggtgaatagtgca
gcattgccagagatggaaaagcaggttgccatttcatccctgtcggctgttatcaagtat
ttggagctgttgtcagatgaatccaactttggacaatttgagctgactacctttgacctc
agccagtatatgatactggataatgcagctgtccgagcccttaacctttttcagggttcc
tctgaaaatgccaacagtacgcagtctttggttgggttgttaaataagtgcagaacccct
caaggacaacgactggtcagtcagtggatcaagcagccacttctggacaagaacagaata
gaagaaaggttaaatttggtggagacctttgtggtagacacagagctacggcagtgtctt
caagaagaccttctgcgtcgttttccagacctcaatcggctagcaaagaaatttcagaga
caagctgcaaccttgcaagattgttaccgaatgtatcaagctattaaccagctgcctaat
gttgttcaggcactggaaaaacatgaaggagtgcaccagatgttgttgttgacagtgttt
ataacacctcttcatgatatctactctgatttctccaagtttcaggaaatgatagaaaca
actttagacatgagtaaggtggaaaatcatgaattccttgtaaagccttcttttgatcct
aacctgacagaattaagagagaagatgaacaaaatagaggagtccatgcaatcttgtctt
aagacagcagctagagagctagggttggaggctagtaagagcatcaaactggagtctagt
gcacagttagggcatcacttccgaattacctgcaaagaagagaaggtcctccggaacaac
gcaaaatataaaatcttagacacacagaagaatggtgtgaaattcactaacagtaaattg
agctccttcaatgaagaatacttaaaatacaaagaggagtatgaagaggcccaggatgcc
attgttaaagaaatcatcaacattgcttcaggttatgcagagccaatacagacaatgaat
gatgtgatagctcagttagatgctgttgtcagttttgctcatgtatcaagtggagcccct
gtgccatacgtccgcccagtcattttggagaagggacaaggacagattgtgttgaaaggt
tccagacacccttgcatcgaagtgcaagatgatgtagcattcattcccaatgatgtcacc
tttgagaagggcaagcagatgtttcatattattactggacctaacatgggagggaaatct
acatacattcgccaggctggagtgatagttcttatggcccaaattggatgctttgtacca
tgtgactcggcagaagtgactattgtggattgtatcctggctcgggtaggagcaggagac
agtcaattaaaaggagtctctactttcatggcagagatgttagaaactgcttcaattctt
aggactgccacagaaaattctctgataatcattgatgagctgggaagaggaacttcaaca
tatgatggatttgggctggcctgggcaatttcagaatacattgcaagcaaaattcatgcc
ttctgcatgtttgccacacattttcatgaactgacagcacttgctggccaagtgccaact
gtcaataatctgcatgtcacagcacttactactgacgacacactgactatgctttaccgt
gtcaaaaaaggtgtttgtgaccagagctttgggatacacgtggcagagcttgttgctttt
ccaaaacatgtaatagagagtgcaaaagagaaagctctggagctggaggaattccaaaac
attggagagcccaaggaatctgaaggagagccagcagtgaagagatgctaccgagaaaaa
caggaaggtgagaaaataattcaggactttgtttatcaagtgaaagcattgccgttgaca
gacatgtctgaggaagacatcagaacgaaactgaaacaactgaaagctggagtgctggca
aagaataacagttttgtaaatgaagttattgcccgaacaaaagccacttcatga
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