Gavialis gangeticus (Gharial): 109297491
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Entry
109297491 CDS
T07453
Symbol
YTHDC2
Name
(RefSeq) probable ATP-dependent RNA helicase YTHDC2 isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
ggn
Gavialis gangeticus (Gharial)
Brite
KEGG Orthology (KO) [BR:
ggn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ggn03041
]
109297491 (YTHDC2)
Enzymes [BR:
ggn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109297491 (YTHDC2)
Spliceosome [BR:
ggn03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
109297491 (YTHDC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
HA2_C
OB_NTP_bind
R3H
Helicase_C
DEAD
HA2_N
AAA_19
Ank_2
AAA_22
nSTAND3
Ank
ATPase
Ank_4
PhoH
AAA_23
AAA_7
AAA_16
T2SSE
SRP54
AAA_29
Motif
Other DBs
NCBI-GeneID:
109297491
NCBI-ProteinID:
XP_019372819
LinkDB
All DBs
Position
Unknown
AA seq
1419 aa
AA seq
DB search
MSRPSSESPQPAPGGRGGRGRAKGLRDIRVDEEVKIAVNLALERFRYGDQREMEFPSSLT
STERAFIHRLSQSLGLISKSKGKGANRYLTVRKKDGSELARTVMTYSLIPNTKHAIRSLI
QRFPVTNKERTELLPKTERGNVFAVEAENREMSKTSGRLNNGIPQIPVKRGESEFDSFRQ
SLPVFEKQEEIVRIIKENKVILIVGETGSGKTTQIPQFLLDDCYKNGIPCRIFCTQPRRL
AAIAVAERVAAERREKIGQTIGYQIRLESRVSPKTLLTFCTNGVLLRTLMAGDSTLSTVT
HVIVDELHERDRFSDFLLIKLRDILQKQANLKLILSSAALDVNLFIRYFGSCPVIHIQGR
PFEVKEMFLEDILRSTGYTNKEMVKYKKEKQREEKQQTTLTEWYSAQDSSSKPEAQRQRS
VPSVAEEYDLLDDGGDTVFSQLTEKDVNCLEPWLIKEMDSCLSDIWLHKDVDAFAQVFHL
ILTENVSVDYRHSETSATALMVASGRGFLSQVEQLVSMGANVHCKSSNGWMALDWAKHFG
QTEVVDLLESYSASLEFGNLDESSLVQANGGDLSAEDRELLKAYHHSFDDEKVDLDLIMH
LLYNICHSCDAGAILIFLPGYDEIVSLRDRILFDDKRFADNVHRYQVFMLHSNMQTSDQK
KVLKTPPPNIRKIILSTNIAETSITVNDVVFVIDSGKMKEKSFDALNCVTMLKMVWISKA
SALQRKGRAGRCRPGICFRLFSRLRFQNMLEFQTPELLRMPLQELCLHTKLLAPINCPIA
DFLMKAPDPPPGLIVRNAVQMLKTIDAMDTWEDLTELGYHLADLPVEPHLGKMVLCAVVL
KCLDPILTIACTLAYRDPFVLPTQASQKRAAMLCRKRFTAGTFSDHMALLRAFQAWQKAR
SDGWERAFCEKNFLSQATMEIIIGMRTQLLGQLRASGFVRARGGGDIRDVNTNSENWAVV
KGALVAGMYPNLVHVDRENLVLTGPKEKKVRFHPTSVLSQPQYKKIPPANGQAAAIQALP
TDWLIYDEMTRAHRIANIRCCSAVTPVTVCLFCGPARLPSNALQEPSSFRVDGAPNDSSD
SEMEDKTTANLAVLKLDEWLHFKLDPEASSLLLQLRQKWHSLFLRRMRAPSKPWSQVDEA
TIRAIIAVLSTEEQSAGLQQPSGIGQRPRPMSSEELPLASSWRSNTSRKSSAETELSDDS
SNAEKVLMKSTSPAFHQPQKYKERGILHSKRSSEDRSDQSSVKSTDSSSYPSPCASPSPP
LSGKGSKSPSPRPNMPVRYFIMKSSNLRNLDISQQKGIWSTTPSNERKLNRAFWESSIVY
LVFSVQGSGHFQGFARMSSEIGREKSQEWGSTGLGGVFKVEWIRKESLPFQFAHHLLNPW
NDNKKVQISRDGQELEPQVGEQLLQLWDHIPVVGKNATD
NT seq
4260 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcggcccagtagcgagtccccgcagcctgcgccgggcggccgtggcggccgcggc
cgggccaaagggctgcgggacatccgcgtggacgaggaggtgaagatcgccgtgaacttg
gccctggagcggttccgatacggcgaccagcgagaaatggaatttccctcttctttgact
agtacggaacgagcttttattcaccgactgagtcagtcccttggcctcatctccaaaagc
aaagggaaaggagcaaacagatacctaactgtaaggaaaaaagatggttcagaattggca
cgtacagtaatgacttacagtttgattcccaatacaaaacatgctattaggagtctaatt
cagagatttcccgtcactaataaagaacgcactgaacttttgccaaaaacagaacgagga
aatgtgtttgctgtcgaagctgagaatcgagaaatgagcaagacaagtgggagacttaac
aacggcatccctcagattccagtgaaaaggggagaatctgaatttgattccttcaggcaa
tctctaccagtttttgagaaacaggaagaaattgtcagaattattaaagaaaataaagtt
attttgattgtgggagaaactggatcaggaaaaacgactcagattcctcagttccttctt
gatgattgttataaaaatggaattccgtgtcgcatattttgcactcagccaagacgtttg
gcagcaattgctgtggctgaaagggttgctgcagaaagaagagaaaagattggccagaca
attggttatcagatccgattagaaagcagggtttctccgaagacactattaacattttgc
actaatggtgttttacttcgcacactaatggcaggagatagcacactgtcaacagtgaca
catgttattgtggatgaattacatgagagggatagatttagtgatttcttgttaataaaa
ctcagagacatattgcaaaaacaagcaaatttgaaactgattctatctagtgctgcccta
gatgtgaatctgtttatcagatattttggaagttgtccggtaattcacatacaaggaaga
ccatttgaggttaaggagatgtttttagaagacattttacgaagtactggatatacaaat
aaagaaatggtgaaatacaaaaaagaaaagcagcgagaagagaaacagcaaacaaccctc
acagaatggtattctgctcaagacagtagtagtaaaccagaggctcaaagacaaagatct
gtcccgagtgtagctgaagaatatgacctgttggatgatggtggtgacacagtattcagt
cagctgactgagaaagatgtgaactgtcttgaaccttggttaataaaagaaatggattcc
tgtctctctgacatatggttgcataaagatgttgatgcctttgctcaggtgtttcacctt
attttaactgaaaatgtcagtgttgattacaggcacagtgaaaccagtgcaactgcacta
atggttgcttcagggagaggcttcttgagtcaagtagagcagctagtcagtatgggagca
aatgtgcactgcaaatcatccaatggctggatggctttggattgggctaagcactttgga
cagactgaggtggttgaccttctggaatcctatagtgcttccttggagtttggaaatctg
gatgaaagttccctggtccaggcaaatggtggtgaccttagtgcagaagacagagaacta
ctgaaagcataccatcacagttttgatgatgagaaagtggatctggacttgattatgcac
ctactttacaacatctgtcatagttgtgatgctggagcaattttaatttttctacctggc
tacgatgaaatagttagcttgagggatcgcattctgtttgatgacaagagatttgctgat
aatgttcacaggtaccaggtttttatgctgcattcaaatatgcaaacatcagatcagaag
aaggtgctgaaaactccacccccaaacatccgcaaaataattctttcaactaacatcgca
gaaaccagcattacagtcaatgatgttgtgtttgttattgactctggcaagatgaaagag
aaatcctttgatgcattgaactgtgttacaatgttaaaaatggtatggatttcaaaagct
agtgccctccagcgaaaaggcagggctgggcgctgtcggcctggaatctgtttccgactc
ttcagcaggctccgatttcagaatatgttggaattccagactccagaacttctaagaatg
ccattgcaggagctttgtttgcacacaaaactgttggctccaattaactgtcctattgct
gattttctgatgaaagccccagatcctccaccaggcttaattgtcagaaatgctgttcaa
atgcttaagacaatagatgccatggatacctgggaagatctcacggaactcggttatcat
cttgctgacctcccagtagagccacaccttggtaaaatggtgttgtgtgctgttgttttg
aagtgcctggatcctattcttaccattgcttgcactcttgcatatcgagacccttttgtc
ctacctacacaggcctcacaaaaacgtgcagctatgctgtgtagaaaacgttttactgcg
ggaacatttagtgaccatatggcgcttctcagggcttttcaggcatggcagaaggcacgg
agtgacgggtgggagagagccttctgtgagaagaactttctttcccaggctacaatggaa
ataatcatagggatgaggacacagttacttggtcagctcagagcttcaggttttgtgagg
gctagaggtggaggtgatattcgggatgttaacaccaactctgaaaactgggccgtagtt
aaaggtgctctagtagctgggatgtatccaaacctcgtccatgtggacagagagaacctt
gtattaactgggccaaaagagaagaaagtgcgatttcacccaacctctgttcttagtcaa
cctcagtataaaaagattcctccagcaaatggccaagctgcagctattcaggcgctcccc
acagattggctaatatatgatgaaatgactagagcacacagaatagcaaacatccgatgc
tgttctgctgtgacacctgttacagtgtgcctcttttgtggaccagcaagattaccaagt
aatgctttacaggagccctcatctttcagagtggatggtgcacctaatgatagtagtgat
agtgagatggaagacaaaacaactgctaatctagctgtattgaagctagatgaatggctg
catttcaaactagatcctgaggcttccagtctgctgttacaactcagacagaaatggcac
agcttatttcttcgccgcatgagagccccttctaaaccttggtctcaagttgatgaagca
actataagagcaatcatagctgttttaagtactgaagagcagtctgcaggtttacagcag
ccttcaggaattggacaaagaccaagaccaatgtcttctgaagagcttcccttagcatct
tcatggagatcaaatactagcagaaaaagctcagcagaaacagaattatctgatgactct
tctaatgctgaaaaagtcttaatgaagtctacatcaccagcatttcaccagccacagaaa
tacaaagaaagaggtatcttacattccaaacgaagttcagaagacaggtcagatcagtca
tctgtgaaatccacagacagtagcagttatcccagcccatgtgccagtccttctcctcca
ttatctggaaagggttccaagtctccttcgccaagaccaaatatgccagttcggtacttc
ataatgaagagtagcaatctgagaaaccttgatatttctcagcaaaagggtatatggtct
acaaccccaagcaatgagcggaaactaaatcgagctttctgggagagcagtatagtttac
ttggtattttcagttcaaggatctggacattttcagggttttgctagaatgtcctcagag
ataggacgtgagaaaagtcaggagtggggctccacaggcttaggaggagtgtttaaggtg
gagtggatccggaaagaaagtcttccctttcaatttgcgcatcacttactcaacccttgg
aatgacaataagaaagtacaaataagcagagatggacaggaactggaaccacaggttgga
gaacagttgctacagctttgggatcatattcctgtggttggaaaaaatgcaactgattga
DBGET
integrated database retrieval system
