Gavialis gangeticus (Gharial): 109297575
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Entry
109297575 CDS
T07453
Symbol
VPS13A
Name
(RefSeq) vacuolar protein sorting-associated protein 13A isoform X1
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
ggn
Gavialis gangeticus (Gharial)
Brite
KEGG Orthology (KO) [BR:
ggn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ggn04131
]
109297575 (VPS13A)
Membrane trafficking [BR:
ggn04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
109297575 (VPS13A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
C19orf12
RRM_fung
Motif
Other DBs
NCBI-GeneID:
109297575
NCBI-ProteinID:
XP_019372971
LinkDB
All DBs
Position
Unknown
AA seq
3203 aa
AA seq
DB search
MVFESLVVDVLNRFLGDYVVNLDSSQLKLGIWGGAVALKNLEIKENALSQLDVPFKVKAG
HIGQLNLQIPWQNLYTQPVEAVLDGVYLLVVPTASIKYDAEKEARQLLEARQRELQRIEE
AKQKIADQDKAKEEKQDTFVEKLVTQVIKNLQVKISNIHVRYEDDITNRENPLSFGVSLQ
NLSLQTADQNWNPCLHDETAKLFYKIVRLDNFFAYWNVKSQMFYHGGYDESLNNLKHGVA
CQNMIPDGYEFVFRPISAKAKLRMNPRSDFDFSSPKMDLDVNLQDIAIEFNKPQYFSVME
LLESIDMMTRNLPYRKYRPDVPLHNNAKAWWKYIIYGVLEVNVQPKLNMWSWEHIQHHRK
QVRNYKEMYKMKITSKKPNEETLKFLEEFEKTLDIFNITLARQQAEVEATKAGLKIYRPG
VKQDEDSSGGWFGWIWGWSGEKEDEKKQQAKGASLEELMTSEEKAKLYAAIGYSETAVDP
TLPKSYEAMRLSVKLLSMSISIRENQEKPELIKFALIDLSTMFTQRPGAQAIRFETKISS
FEVMGMSREKIIPCLLSSRTVCSENDTSLLSIMFETNPLDEKADQKIRLEAQPLEIIYDA
RTVNSLVDFFRPPKDVHLEQLTSATLMKLEEFREKTSTGLLYVIETQKVLDLNINLMASY
IIVPQNGFYESTSNLLLLDLGNLKMTSKSRSDLSVLKVGQNTIEDIMSRAYDVFDIQLSS
IQLLYSKHHEKWQEARKLKYSSQHILQPMDLKVEFSRAMVVSDARMPKFKISGQLKLLFV
QISDKKLTGILELIDSIPKPESAPATASPPKMSQIQVSPVLSTQVSQNVLPVLDLHSLPE
SESEEEFYDAPSSPVEDMPFFEASSGSLTRANSMRKKRLHKHDSLKNMTDLQLTFEIPEV
LIQLCRLDDDDDDTEKPVLQLKVLGLGTELKLRTFDMSAHAFLKEVCLLCPEYMDDDDKP
VYIITTLDNTQDDLLTLEYTKADINGPELKTTYKNILQLLKVNFSSLDVHLHTEALLNAM
NYLNNLLPKQETKVTEELAQEKEEEKKDVLKKLKSKKSKYEDVVDLHICADLSCLRVFIR
EQKHRISEIHIEGLDSQVVMRKAATEVIAKLKNISIMDSDEKALYKKALYITGKEVFSFK
MVSYMDATDGGAYVDMNVFDSQVYLTVGCIQVVFVNKLVSSILAFINNFQAAKEAVTEAT
VQAAEKAATGVKELAQRCSRMALDVNIKAPVVIVPQSSVSTNVLVADFGRITIKNKFFIA
KTKARCALPPVVDSMTVNLSELKLYRSSVERGSLQTEVQLLQPVNLEIVVERNLAAAWYT
EIPDIAISGRLKPMNLILSQEDIATILRTLNENLWDNSGTPPPLPESKDTNSNYSDAHST
SQNSAGATLVTSAVVELHSPVKAKTTLKLDFQFDCLTLVLYSPNSKQVAVLNQRDDHLKL
AEFKLVLISAAVKMLSDGSMNALVKLANCTLDDKRLTVQKATPRMVEMKHGSEKKDMVDI
NYKQGRDGTVLSTIVQEIYLCASMEFLLTVADVFLKANEESAAAQKTIKQSLAIKESVAV
KEQASVQPVSTMEINVVVKNPEIVFVADLTRSEAPSLVVTTQCEIFIKNSPQLYKMTASV
KEMQMKACPFLPEKRKGNITTVLQPCDLFFEMLQSGTNPQMIEVSIKSLTVKVSPIIINT
VMSIMSAFSPTAETAEEEISPVPPDLWDKKDVKNLKMWFLEESSENENTDTVAELVPTGQ
TLHMEIASVIITLEAGVGHRTVPMLLAKSAFSGEVKNWSTLINLHSQLELEVHYFNEMFG
VWEPLLEPLEIEKSDDFKPWTLGIKMKKKAKKALVESDAEEEQYKVPEYKTVINISSKDQ
LNITLSKCGLLMLNNLGTAFAEAASQTSDIFKKDRAPFVVMNSLGLPITVSPSDAFSVIN
DKSGGKSFQLKDGESLNMDYLRTKSESDQFTAMTTLSSKRFYIQLSPHGHSTADKIPLTK
VGRFLYRVRHEGSGVERFIVCQIDTIEGSKMITIRSPVQIRNHFSVPLSIFEEGRCLGTA
SPKNEFSIPLTSYRSVLSLQPVTDENGVGGEYEMCEGISFDEIMKNVDSLLQRKCQPVKS
ASYSFIINIVPAKDTLSSSERGDVQWDFPYVVHLWPSVLLRNLLPYQMTYSLEGDGNTCV
ILEDGCSAQIHNAVLDQTKLELQLHNYLDQNWRSEYQIRTAQQEIGFITFSSVTELDKTE
LDIAVHVTYTVGQMVIAVHCPYWMVNKTGRMLQYKADGIHRKHPPDYKKPLLFSFQPKNF
FQNNKVQLMVTDSDLSDQFSLDTVGSHGSVKCKSHKREFQVGITIDNSSFNITRIVTFTP
FFMITNRSKYTLEVAEDGKEKWIPITLQQCIPFWPENDANKLLVRVENSDIPPKKIHFNK
QENCTLMHLDNELGGLIVDVNMTEHSTVITFSDYHDGAAPFLLINHTKNEIIEYGQSSLS
MMEDSLQPNKAVLYTWAEPVGSRILKWKCGKKEGEVSQKEDKMTPLTLDDKRKMYLVSFF
EGLQRIILFTEDQNVFKLTYESVKAELAEQEIVMSLQDVGISLVNNYTKQEVSYIGITSS
DIVWETKPKKKSRWKPMSIKQTEKLEQEFKEYSEQSPSENKIVELESNVSVCLTPNGSNM
KIRQPNEIPIRRNYLPALKVEYSTSAHQKSFRIQVYRIQIQNQIPGAIFPFVFYPIKPPK
SVTLDSAPKPFTDISIVMRTAGHSQISHIKYFKVLIQEMDLRLDLGFLFALLELFTQADM
PKDEEITLFKKDVESLHEELMSVSSMDTSQISLYEYFHISPIKLHLSFSLSTGGEDGNKE
ERQTELIPVQSLNLLLKSIGATLTDVQDVVFKLAFFELNYHFCTTAQLQSAVIRHYSKQA
IKQMYVLILGLDVLGNPFGFIRGLSEGVEAFFYEPYQGAIQGPEEFIEGMALGLKALVGG
AVGGLAGAASRITSAMAKGVAAITMDEDYQHKRREAMNKQPTGLREGITRGGKGLVSGFV
SGITGIVTKPIRGAQKEGAAGFFKGVGKGLVGAVARPTGGIIDMASSTFQGIKRVTDSSD
DVASLRPPRFFGEDGVIRPYRLRDGTGSQMLQKIENGRFAKLKYIAHAMVNATDLLMVTK
SGVLFVTKGTFGQLTCEWQYTYDEFTKEPFIVDERRLRIEAKERVKSVFHAKEFGKIINF
RTPEDAKWILSKLEEVRENHPKL
NT seq
9612 nt
NT seq
+upstream
nt +downstream
nt
atggtgtttgagtcgctggtcgtggacgtgctgaatcggttcctgggcgactacgtggtg
aacctggacagctcccagctcaagctgggcatctggggaggagccgtagcacttaagaat
cttgaaataaaggaaaatgcactaagtcagttggatgtaccatttaaagtgaaagcgggt
catattggtcaacttaacttacagatcccatggcaaaatctttatactcaacccgtcgaa
gcggttttggatggagtttacttgcttgtagtgcccacagccagtataaagtatgatgct
gagaaagaagccagacagctcctggaagcaaggcaaagagaattacaaagaatagaggaa
gcaaaacagaaaatagctgatcaagataaagcaaaagaagaaaagcaagacacttttgta
gaaaagttagtcactcaggtcatcaaaaatcttcaagtgaaaatttccaacattcatgtg
cgatatgaagatgatattacaaatcgagagaacccgttgtcatttggtgtttcacttcag
aatctcagtttgcaaacagcagatcaaaattggaatccatgtttacatgatgaaactgcc
aagctgttctataagattgtacgacttgataacttttttgcttactggaatgtgaagtct
cagatgttctaccatggtggttatgatgaatctttgaataatttaaagcatggagttgcc
tgccaaaatatgattccagatggttatgagtttgtatttcgtccaatttcagctaaagcc
aaactccgtatgaatcctcgatctgattttgacttttcttcaccaaaaatggacttggat
gtaaatttacaggatatagccattgaattcaataaaccacagtacttcagtgttatggag
ctccttgagtccattgatatgatgacccgaaacctaccatacagaaaatacaggcctgat
gttcctttgcacaacaatgccaaggcatggtggaaatacattatttacggtgtccttgaa
gtaaatgtccaacctaagcttaatatgtggtcatgggaacacattcagcatcacagaaaa
caagtgaggaattacaaagagatgtataaaatgaagataacatcaaagaaacccaatgaa
gagactttaaaatttttggaagaatttgaaaagacattggacatctttaatatcacatta
gccagacagcaggcagaagttgaggcaaccaaagctggattaaagatttacagaccaggg
gtgaaacaagatgaagatagttctggtggctggtttggatggatatggggctggtcaggg
gaaaaagaagatgaaaagaagcaacaggcaaagggtgcaagtcttgaagaattgatgaca
tctgaagaaaaggctaaactctatgcagcaattggatatagtgaaacagctgttgatcct
acactgcccaagtcgtatgaagccatgaggctctctgtaaagctgttaagcatgtccata
tcaataagggaaaaccaggagaaacctgagttaataaaatttgcattaattgacctgagt
acaatgttcacacaacgaccaggtgcacaggcaataagatttgaaacaaaaataagctca
ttcgaagttatgggcatgtctcgagaaaaaattataccctgtctactatcttctcgaaca
gtctgttcagaaaacgatacatcactcttgagcataatgtttgagaccaatcccttggat
gagaaagctgatcaaaaaatcagactagaagcacagccactggaaataatatatgatgct
aggactgtgaatagtttagtggatttttttagacctccaaaagatgtacatttagagcaa
ctgacctctgcaactttgatgaagcttgaagaatttcgtgagaagacatcaacaggattg
ttatatgttattgaaacacagaaagttcttgatttaaacattaacttaatggcatcatat
atcatcgttccccaaaatggtttttatgaatctacatcaaatttactacttctggatctt
ggtaatcttaagatgacaagtaaaagtcgttctgacctatcagttctcaaagtaggccaa
aacactattgaagacataatgtcaagagcctatgatgtatttgatattcagctaagcagt
atacagctactttatagcaaacatcatgaaaagtggcaggaggctcgtaagctaaaatat
tcgtctcaacatatcttgcagccaatggatttgaaagtggaatttagcagagctatggtt
gtctctgatgcaagaatgcccaaattcaaaatttctggacaactgaaattactctttgtc
caaatatcagacaagaaactgactggtatcttggagctaatcgacagcattcctaaacca
gaaagtgctcctgccacagcttctcctccaaaaatgtcccagattcaggtgtcaccagtg
ctttcaacacaggtgtcacaaaatgtccttcctgttttggatcttcactcattacctgaa
tcagaatccgaagaagaattttatgatgctccaagtagtcctgtagaggacatgccattt
tttgaagcatcatctggctccctcaccagagcgaacagcatgagaaaaaaaaggttacat
aagcacgactcactgaagaatatgacagaccttcaactgacatttgaaatacctgaggtc
ttaattcagttgtgtcgtcttgatgatgatgatgatgatactgaaaagcctgtgttgcag
ctaaaagttttaggattaggcactgagcttaaactaagaacgtttgatatgtctgcacat
gcttttcttaaagaagtctgtctcttatgtccagagtacatggatgacgatgacaaacct
gtttatatcattacaactttggataacacgcaagatgatcttcttacgctggagtacaca
aaggctgatattaatggaccagagctgaaaactacttataagaatattttacagttgtta
aaggtaaatttctcttccttggatgttcatttgcatactgaagcacttctgaatgctatg
aattacctaaataatcttttaccaaagcaagagactaaagtaacagaagaactagctcaa
gaaaaagaggaggagaaaaaagatgtccttaagaaattaaagtcaaaaaaatccaaatat
gaggatgttgtggatctccatatctgtgcagatttatcctgtttacgggtttttattaga
gaacaaaaacacaggatatctgaaattcacattgaaggtctggacagtcaagtggtcatg
agaaaagcagctactgaagtgattgcaaaattaaagaacataagtattatggattctgat
gagaaggcattgtataaaaaggctctttatatcacaggaaaagaagtcttcagttttaaa
atggtgtcttatatggatgctacagatggtggtgcctatgtagatatgaatgtttttgat
agccaggtttacttaactgtgggctgcattcaagttgtttttgtcaacaagcttgtttcg
tctatattggcttttataaacaactttcaagctgctaaggaagctgttactgaagcaact
gttcaagcagcagagaaagcagctacaggtgtgaaagaattggcacaaaggtgttcccga
atggcattggatgtcaatattaaagcacctgtagtcatagtgccacagtcatctgtgtcg
actaatgttttggttgctgatttcggtcgtatcaccataaagaacaagttcttcattgct
aaaacaaaagcacgatgtgcccttccacctgttgttgactcaatgacagtgaatttgagt
gaactaaagctatacaggtcatcagttgagagaggttcactgcaaactgaagtacagcta
ttgcagcctgtaaatcttgaaattgttgttgaacgaaatttagctgctgcttggtatact
gagattcctgatatagcaatatctggacggctcaagcctatgaatctaattctcagtcaa
gaagacatagccactatattaaggacactgaatgaaaatttatgggacaattctggtaca
ccacctcctttgccagaatcaaaagatacaaatagcaactatagtgatgcacacagtact
tctcagaactctgcaggagcaactctggtgacatctgctgtagtggaattgcattcacct
gttaaagctaaaacaactctaaaactggacttccaattcgattgtctgactttggtactg
tatagtccaaactctaaacaggttgcagttttgaatcaaagagatgatcatttaaaactc
gcagagtttaaattggtcttgatttcagctgctgtcaaaatgctatctgatggttcaatg
aatgctttagtcaaattagcaaactgtacattagatgataaacgtctgacagtccagaag
gcaactccaagaatggtagaaatgaaacatggatctgaaaagaaagacatggtggatata
aactacaagcaggggagagatggcactgttcttagtaccattgttcaagagatatacctc
tgtgcaagcatggaatttctacttactgttgcagatgtattcctaaaggctaatgaagaa
agtgctgcagcccagaaaactataaaacagtctttagctataaaggaatctgtagctgta
aaggaacaagcatctgtgcaaccagtatcgacaatggaaattaatgttgttgttaaaaat
ccagagatcgtgtttgtggctgatttaacaagaagtgaggctccttcattagtagttaca
acacaatgtgaaatcttcattaaaaattcccctcagttatataaaatgacagcttctgtt
aaagagatgcaaatgaaagcatgtccctttcttccagaaaaaagaaaagggaatattacc
acggtattgcaaccttgtgatctcttctttgaaatgctgcagtcaggtactaatccacaa
atgatcgaagtgtcaattaaatccctaacagtaaaggtttcaccaattatcataaataca
gtgatgagtattatgtcagccttttctccaacggcagagactgcagaggaagagattagt
ccagttcctccagacttgtgggataagaaagatgtaaaaaatctaaaaatgtggtttctt
gaagagtcaagtgaaaatgaaaatacagatacagtagcagagttggttcctacaggacag
accttacacatggaaattgcatcagtcatcataactcttgaagctggggtgggtcacaga
acagtacctatgcttctggcaaaatcagcattttctggtgaggtcaaaaactggagtacc
ctcatcaaccttcattcccagcttgaactagaggtacattactttaatgagatgtttggt
gtgtgggaacctttgcttgaaccactagaaattgaaaagagtgatgattttaaaccgtgg
actcttggaatcaagatgaaaaagaaggctaaaaaagcactagttgagtcagatgcagag
gaagaacagtacaaggtgccagaatataaaacagtaataaacatctcctcaaaagaccag
ctgaacattacactatccaaatgtggactactgatgttgaataacttgggcacggcattt
gctgaagcagctagccaaacttcagatatcttcaaaaaagatcgagcaccatttgtagta
atgaattctttaggacttcccatcactgtatcgcccagtgatgcctttagtgtgataaat
gataaatctggaggaaaatcttttcagttaaaagatggagaaagtctaaatatggactat
ctcagaaccaaaagtgagagtgaccagttcacagcaatgactaccctaagcagcaaaagg
ttttacattcaacttagtcctcatggtcactccacagctgataagattccattgacaaaa
gtgggccgatttctgtacagagtaagacatgaaggatctggtgttgaaaggttcattgtt
tgtcagattgatactattgaagggagtaagatgataactatacgttcacctgtgcagata
aggaatcatttttctgttccgctgagtatttttgaagaaggaagatgtctaggaactgct
tcacctaaaaatgaattcagcataccattgacctcttataggtctgtacttagtttgcaa
cctgtaactgatgaaaatggagtgggaggagaatatgaaatgtgtgaaggaattagcttt
gatgaaattatgaaaaatgttgacagcctgttacagaggaaatgccagcctgtgaagtct
gctagctattcatttatcattaatattgtgccagcaaaagataccttgtcatcttcagaa
cgtggggatgttcaatgggatttcccgtatgttgttcacttatggccttctgttcttctt
cgcaatcttctcccttatcaaatgacgtattctctagagggagatggcaacacatgtgtc
atcctagaagatggttgctcagctcagattcataatgcagtattggatcagaccaagctg
gaattgcaattacataattatcttgatcaaaactggagaagcgagtaccagataagaact
gcccagcaagaaattggctttatcaccttctcttctgtcactgaactggataagacagaa
ttggatatcgctgtccatgtcacctacacagttggacagatggttatagcagttcactgt
ccatattggatggtaaataaaactggccgaatgttgcaatacaaagctgatggtattcat
cgtaagcatcctccagactacaaaaagccacttcttttttctttccaacctaaaaacttc
ttccaaaacaacaaggttcagcttatggtgactgacagtgacctgtctgatcagttttca
ctcgatactgttggcagtcatggttctgttaaatgcaaaagtcataaaagagagtttcaa
gttggtatcactatagataatagtagctttaacattaccagaattgtgacattcacgccc
tttttcatgatcacaaacagaagcaagtatactttagaagtagctgaagacggcaaggaa
aaatggattcctatcactttgcaacagtgtattcctttttggcctgagaatgatgcaaat
aagctgcttgttagagttgaaaactctgacattccaccaaagaagatacattttaataag
caagagaactgtacattgatgcatttagacaatgagcttggaggcctcatagtggacgta
aacatgactgaacattctacagtgattactttctcggactaccatgatggtgcagctccc
ttcctgttgattaaccataccaaaaatgaaattattgaatatggccagagttctctcagt
atgatggaagacagtcttcagccaaataaagcggtgttgtacacgtgggctgagccagta
ggctctaggatattgaaatggaaatgtggaaagaaggaaggagaagtatctcagaaggaa
gacaagatgacacctcttactctggatgataaaaggaaaatgtatttagtctcatttttt
gaaggcttacaacgtattatcctattcactgaagatcagaatgtgttcaaactaacatat
gaaagtgtaaaagcagaactggcagaacaggaaattgttatgtcattgcaagatgttgga
atttctttggtcaataattatacaaagcaagaagtgtcttacattggaattacaagttct
gatatagtttgggagacaaaacctaagaagaaatctagatggaaaccaatgagcatcaag
caaacagaaaagttagagcaagaatttaaagaatactctgagcaatccccttcagaaaat
aagattgttgaactggaatcaaatgtttcggtttgtttaacacctaatggcagtaacatg
aaaatccgacagccaaatgaaattcccataagaagaaattatctccccgctttaaaggta
gaatatagtacatctgcacatcagaagtccttcagaatccaggtttacagaatacagata
caaaaccagattcctggagccatatttccctttgtgttttatcctattaaacctccaaag
tccgtcaccctggattcagcaccaaagccatttactgacatcagtattgtcatgaggact
gcaggccattctcagatatcgcatattaagtactttaaggtactgattcaagaaatggat
ctcagattagaccttgggttcctatttgcattgcttgagctctttacgcaggcggatatg
cccaaagatgaagagattacacttttcaaaaaggatgtagaatctctccacgaagaattg
atgagtgtgtcatcaatggatacatcacaaatcagcttgtatgaatactttcatatctct
ccaatcaagttacatttaagtttttcgctcagcactggtggagaagatggcaacaaagaa
gaaagacaaacggaactaattccagttcagtctttgaatctcctgctgaagagtattggt
gccacactcacagatgtacaagatgttgtcttcaagttggctttctttgaactcaactat
cacttctgtacaaccgcacagctacaatcagcagtcataagacattattcaaaacaggct
attaaacaaatgtatgttcttatacttggccttgatgttttgggtaatccatttggcttc
attagaggtttgtctgaaggagtagaagcattcttctacgaaccataccagggagccatc
cagggtcctgaagaatttattgagggaatggcactaggacttaaagcactagtaggcgga
gctgttggcggattagctggtgctgcatccaggattactagtgctatggctaaaggagtg
gcagcaataaccatggatgaagactaccaacataagagaagggaagccatgaataaacaa
cctactggcctcagagaaggcatcactcgtggagggaaaggcttagtatctggctttgtt
agtggcataacaggaatagtgacaaaaccaataagaggagcccagaaagaaggagcagct
ggctttttcaaaggtgttggaaaaggtttagtgggagcagtagcaaggcccactggagga
atcattgatatggctagcagcacatttcagggcattaaaagagttacagattcttctgat
gatgtggcaagtctgcgtccacctcgtttctttggtgaggatggagttattaggccttac
agattaagggatgggaccggaagtcaaatgttacagaaaattgaaaatggaagatttgca
aagctcaaatatattgcacacgcaatggtgaatgctacagatttgttaatggtaacgaaa
agtggtgttttgtttgtgacgaaaggaacatttggacaactgacatgtgagtggcagtat
acttatgatgagtttaccaaagagccattcattgttgatgaaagaagattacgtattgaa
gccaaggaacgggttaaatctgtgtttcatgccaaagagtttggaaaaataattaatttt
agaacaccggaggatgccaagtggatcctttctaaattggaagaagtgagagagaatcat
ccaaaattgtaa
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integrated database retrieval system
