Gavialis gangeticus (Gharial): 109297819
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Entry
109297819 CDS
T07453
Symbol
SKIV2L2
Name
(RefSeq) superkiller viralicidic activity 2-like 2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
ggn
Gavialis gangeticus (Gharial)
Pathway
ggn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ggn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109297819 (SKIV2L2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ggn03019
]
109297819 (SKIV2L2)
03041 Spliceosome [BR:
ggn03041
]
109297819 (SKIV2L2)
03009 Ribosome biogenesis [BR:
ggn03009
]
109297819 (SKIV2L2)
03016 Transfer RNA biogenesis [BR:
ggn03016
]
109297819 (SKIV2L2)
Enzymes [BR:
ggn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109297819 (SKIV2L2)
Messenger RNA biogenesis [BR:
ggn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
109297819 (SKIV2L2)
Spliceosome [BR:
ggn03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
109297819 (SKIV2L2)
Complex C
U4/U6.U5 tri-SnRNP related factors
109297819 (SKIV2L2)
Ribosome biogenesis [BR:
ggn03009
]
Eukaryotic type
Pre-60S particles
Helicases
109297819 (SKIV2L2)
Transfer RNA biogenesis [BR:
ggn03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
109297819 (SKIV2L2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
AAA_22
Helicase_dom4_arc
Motif
Other DBs
NCBI-GeneID:
109297819
NCBI-ProteinID:
XP_019373405
LinkDB
All DBs
Position
Unknown
AA seq
1033 aa
AA seq
DB search
MADAFGDELFSVFEEEAAAPSGAKRARAGAVEPAGKAGKRANAKSPAASAGKTKTEAEVD
STEDAVFAKKVKLEDGVAEEVNLADLMPKVKVQAVETVEGCTHEVALPADEDFVGLKPRN
GKAAKEYPFILDSFQREAILCVDNKQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTS
PIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWV
IFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIYT
DYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKGGTK
GPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFNNAVD
CLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGI
NMPARTVLFTSARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTVGK
QLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVVEKVNKLE
DQYNKIEIPNEDSVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLVKVKNEDDDF
GWGVVVNFSKKSNVKPNSGELDPLYVVEVLLHCSKESLKNSATEAAKPAKPGEKGEMQVV
PVLVHLLAAISSVRLYIPKDLRPIDNRQSVLKSIQEVQKRFPDGVPLLDPIDDMGIKDQG
LKKVIQKIEAFEHRMYSHPLHNDPNLETVYKLCERKAQIAVDIKAAKRELKKARTVLQMD
ELKCRKRVLRRLGFATSSDVIELKGRVACEISSADELLLTEMMFNGLFNDLSAEQATALL
SCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLDIDEENYLNSFRPNLMDV
VHTWANGANFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGITK
IKRDIVFAASLYL
NT seq
3102 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcgttcggggacgagctgttcagtgtcttcgaggaggaggcggccgcgcct
tcgggcgccaagagagccagggcgggggctgtcgagcccgccggcaaggccgggaaacgt
gccaatgccaaatctccagcagcctcggccggaaaaaccaagacagaggcagaggtggac
agtaccgaggatgccgtgtttgcaaagaaggtcaagctggaggatggcgtggcggaggag
gtgaatcttgcagatctgatgccgaaagtaaaggtgcaagctgttgaaactgttgaaggt
tgtacacatgaggtggcacttcctgcagatgaagactttgtaggtctaaagccgagaaat
ggaaaagctgcaaaggaatatcccttcattcttgattcttttcaaagagaagctatcctt
tgtgtggataacaaacagtctgtgttagtgtccgctcatacatcagctggcaaaacagtg
tgtgcagagtatgccattgccttggctctgagggagaaacagcgtgtcatatttaccagt
cctattaaagctctgagcaaccaaaagtatcgtgagatgtatgaagaatttcaggatgtt
ggtctaatgacaggagatgtcaccattaatcctacagcttcttgtcttgtaatgacaacg
gagattttgagaagtatgctctacaggggttcggaggttatgcgagaagttgcctgggtt
atatttgatgaaatccattatatgagagactcagaacgtggtgtggtttgggaagagacc
attattttgctccctgacaatgttcactatgtgtttttgtctgccactattccaaacgcc
cgccagtttgctgaatggatctgccatcttcacaaacagccttgtcatgtgatttacaca
gattatcgacctactcctctccagcattatatctttccagcagggggcgatggactccac
ctagtggttgatgaaaatggggatttcagagaagataattttaatacagcaatgcaggta
ttaagagatgctggtgatttggcaaaaggggatcagaaggggaggaaaggaggaacaaaa
ggaccatccaatgtgtttaagattgtgaagatgatcatggaaaggaattttcaacctgta
attatattcagtttcagcaagaaagattgtgaagcctatgcccttcaaatgacaaaatta
gacttcaatacagatgaagaaaagaagatggttgaagaagtatttaataatgcagtcgac
tgtttgtctgatgaggacaaaaagcttcctcaggttgagcatgtgcttccacttctaaag
agaggaattggtatccatcacggtggcttgcttcctattttaaaagaaactatagaaatt
cttttttctgaaggattgattaaggccttatttgcaactgagacttttgctatgggaatt
aacatgccagccaggacagtgttgttcacgagtgctcgtaaattcgatgggaaagatttc
cgatggatctcctcaggcgaatacatccagatgtcaggtcgtgcagggcgtcgaggtatg
gatgacagaggtatagtaattcttatggtggatgagaagatgagtccaacagtcgggaaa
cagcttcttaagggttcagcggatcctctaaacagtgcttttcatttgacgtacaacatg
gtattgaacttgctgcgagtagaggagattaatcctgaatacatgttagaaaaatccttt
tatcaatttcaacactacagagctattccaggagtagtagagaaggtgaataagttggaa
gatcagtataacaaaattgaaattccaaatgaggacagtgtggtcatctattataaaatc
cgacagcagcttgctaaacttggtaaagagattgaagaatatattcacaagccaaagtac
tgtttgccgtttttacagcctggaaggctggtaaaggtaaaaaatgaagatgacgacttt
ggttggggagtggttgttaacttctcaaagaaatcaaatgttaagcctaattctggtgaa
ctggacccattgtatgtggttgaagtcctgctacactgcagcaaagagagtttgaaaaat
tctgctactgaggctgcaaagccagcaaaacctggtgaaaaaggagagatgcaggttgtt
cctgttttggtgcatcttctcgcagctatcagcagtgtccgactttacatacccaaagat
ctgagacctattgataatagacaaagtgtgttaaagtctatacaggaagttcaaaagcgg
ttccctgatggcgtaccattgctagatcctattgacgacatgggtattaaagatcaaggg
ctgaaaaaagtcattcaaaaaatagaagcatttgagcataggatgtattcacacccactt
cataatgatcccaatttggagacagtttataagctttgtgaaagaaaagcccagattgct
gtggatattaaagcagcaaagcgagaactgaagaaagccagaactgtcttacaaatggat
gagctcaaatgccgcaaacgtgttttgagaaggttgggttttgccacgtcctctgatgtc
atagagttgaaaggaagggttgcttgtgaaatcagcagtgctgatgaactgctcctgaca
gaaatgatgtttaatgggctcttcaatgacttatctgcagaacaagcaactgcattacta
agctgttttgtattccaggaaaattccagtgaaatgcccaaattgactgaacaattggca
ggaccacttcgccaaatgcaggaatgtgctaaaagaattgccaaagtttccgcagaagca
aaattggatattgatgaagaaaattaccttaactccttcagacccaacctaatggatgta
gtacacacgtgggcaaatggagctaattttgctcacatttgtaaaatgaccgatgtcttt
gaaggtagcataattcgttgtatgaggcgactagaagaattgcttcgacagatgtgtcaa
gcagcaaaagccattggaaatacagagctggaaaataagtttgcagaaggaattacaaaa
atcaagagagacattgtgtttgctgcgagcctttacctctga
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integrated database retrieval system
