Gavialis gangeticus (Gharial): 109299248
Help
Entry
109299248 CDS
T07453
Symbol
IGHMBP2
Name
(RefSeq) DNA-binding protein SMUBP-2
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
ggn
Gavialis gangeticus (Gharial)
Brite
KEGG Orthology (KO) [BR:
ggn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ggn03009
]
109299248 (IGHMBP2)
03012 Translation factors [BR:
ggn03012
]
109299248 (IGHMBP2)
Enzymes [BR:
ggn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
109299248 (IGHMBP2)
5.6.2.5 RNA 5'-3' helicase
109299248 (IGHMBP2)
Ribosome biogenesis [BR:
ggn03009
]
Eukaryotic type
Other ribosome biogenesis factors
109299248 (IGHMBP2)
Translation factors [BR:
ggn03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
109299248 (IGHMBP2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
R3H
AAA_19
AAA_30
zf-AN1
Helicase_RecD
Viral_helicase1
ResIII
nSTAND3
DEAD
AAA_16
Flavi_DEAD
AAA_22
UvrD-helicase
SLFN-g3_helicase
IstB_IS21
AAA_25
AAA
DnaB_C
VWA_2
PhoH
ABC_tran
Zot
NTPase_1
NPHP3_N
UvrD_C_2
RL
Motif
Other DBs
NCBI-GeneID:
109299248
NCBI-ProteinID:
XP_019375395
LinkDB
All DBs
Position
Unknown
AA seq
988 aa
AA seq
DB search
MPVQGFAARQLQLLQEEREAEIGEARAWRENISLKELQRRGVCLLKLQVASQRTGLYGRL
LVTFQPRKYESDVELPYNSFGPGDIVGLYESTDQGDPLSTGIVTHVTPKLVTIAFEESRD
GLLSLDRESSYRLLKLANDITYKRLKKALNTLSQYHSGPAFNLIDVLFFSSDPSPPSETR
PLKFYNELLDISQQEAVSFSLAQKELAIIHGPPGTGKTTTVVEIILQAVQQGLKVLCCAP
SNVAVDNLVERLAAYKVRILRLGHPARLLESIQHHSLDAVLARGDNAQIVADIRKDIDQA
FARTKRTQDKGERSHFLNEIKTLRKELKEREETAMTTVLTQADVVLATNTGASPDGPLKL
LPENHFDLVVIDECAQALEASCWIPLLKARKCILAGDHKQLPPTIISHKAAAKGLSLSLM
ERLIQKYGESIVRMLTVQYRMHQAIMQWASTEMYGGRLTAHPSVAHHLLKDLPGVASTEE
TRMPLLLIDTAGCGLFELEVEDEQSKGNQGEVRLVGLHVQALVNAGVKAKDIAVIAPYNL
QVDMLREHLCPKYPELEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRINVAITR
ARRHVAVVCDSRTVSNQVFLKQLVDYLSEHGEARTAFEYLDDIVPENYSHENSQGHPEQG
EGPKTVPSSTPKPQSHGQKAKPAAGKPILPKASVGPAQNVNGIGKERMEVKDNSGKFKAM
LVDFLESSKAQLDFPPSLNSHDRMLLHQMAEEYRLQHVSTGEGRQRYLSIRKRPPATVSA
TVTNKANEQAPSCESEGPPREAPSPGQTGGSSMSSGKVDLKVLHLERMQQEKAKWEERAR
RTQESSVNLAGTAGKKHKNEAKGKTAAKADNTTAEEDIDTLISAVVKADNTCGFPRCKAS
IATLGQLCLHCNKRYCLSHHIPEVHGCGEKAKVHARQRISKEGVLYAGSGSKDKSLDPTK
RAHLQRRLDKKLNELSNQRKSKKKDQEK
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atgccggtgcagggtttcgctgcgcggcagctgcagctgctgcaggaggagcgggaggcc
gagatcggcgaggccagggcatggcgagaaaacatctccttgaaagaacttcagcgcagg
ggggtctgcttgctgaaactgcaagtggccagtcaaagaactgggttgtatggacgactg
cttgtaacttttcagccgagaaagtatgagtcagatgtggagctgccctataacagcttt
gggcctggtgacattgtgggtctttatgagtccactgatcagggtgatccgctctcaact
ggaattgtgacccacgtaacccccaagttggttaccattgcctttgaggaatctcgggat
ggcctgttaagcttggaccgggagagttcttatcgcctgctgaaattggccaatgatatc
acctacaagaggctgaaaaaagctttaaatacgttaagccagtatcactctggtccagca
ttcaatcttatcgatgtcctcttcttttcctctgatccaagtccacccagtgaaacaagg
ccgttaaagttctacaatgaattgctggatatctctcagcaggaagcagtgtccttttcc
ctggcacagaaagaacttgccattattcacggaccacccggcactggcaaaaccaccacg
gtggtggagataatactccaagctgtgcagcaaggcctgaaggtcctgtgctgtgcccca
tcaaatgtggcagtagataatctagtggagagacttgctgcttacaaagtgaggatcctg
cgcttgggtcacccagctcgtctcctggagtccatccagcatcattccctggatgcggtt
ttggcccgtggagataatgcccagatcgtggctgacatcaggaaagatattgaccaggca
tttgccaggaccaaaaggactcaggacaagggagagagaagccattttctaaatgagata
aagaccttgaggaaggagctgaaggagcgagaagaaactgctatgactacagtccttacc
caggctgatgttgttcttgccacaaacacaggtgcttcccctgatggtcccttgaagcta
cttcctgaaaatcacttcgatctggtggtgatcgatgaatgtgcccaggctcttgaagca
agctgctggatacctctgctgaaagccagaaagtgcatcctggctggggatcacaagcag
ctaccacccacaatcatatctcacaaggctgctgccaaaggtctttctctcagtttaatg
gagcgtctaattcagaaatatggcgagagcatcgtgaggatgctgactgtgcaatatcgg
atgcatcaagccataatgcagtgggcttccacagaaatgtatggtggccgacttacagct
cacccttctgtggctcatcatttgctgaaggacctgccgggagttgcttctactgaagag
actaggatgccattactgctcatagataccgctggctgtggtctatttgagcttgaagtg
gaagacgagcagtctaaagggaaccaaggggaggtgcgccttgttggcttgcatgtccaa
gcattggtgaatgctggtgttaaagcaaaagacattgctgtcattgctccttacaacctt
caggtagacatgctaagagagcacctgtgtcccaagtatccagagctagaaattaaatca
gttgatggtttccagggaagggagaaggaggctgtcatactgtcctttgtgagatccaac
aggaagggggaggtgggcttcctcgccgaagatcggagaataaacgtggctatcacccgt
gcacgacgccatgtggcagttgtctgtgactctcgaaccgtcagcaatcaggtctttctg
aagcaactagtggattacctcagtgagcatggggaagcacggacagccttcgagtacctt
gatgacattgtgccagaaaactactctcatgagaactctcagggtcaccctgagcaaggg
gagggacccaaaactgttccatcgtccactccaaaacctcagtcccatggccagaaagcc
aaaccagctgcaggaaaacccattctcccaaaggcaagcgtaggtcctgcacagaatgtg
aatggcattgggaaggagaggatggaggtaaaggacaattcaggcaagttcaaggccatg
ctagtggatttcctggagagcagcaaggcccagctggatttccctccttctttaaattct
catgacaggatgctgctccaccaaatggctgaagaatacaggctacagcatgtcagcact
ggggaagggagacagcggtacctcagcatccgcaagagaccccctgccactgtctctgct
acagtgactaacaaagccaatgagcaggctccatcctgtgagtcagaagggcccccaaga
gaagcccccagccctggtcagacaggagggagcagcatgagctcagggaaagtcgatctg
aaagtgctgcacctagagaggatgcaacaggaaaaagccaagtgggaagagagggcgaga
agaacccaggagtcaagtgtgaatctggcagggacagcaggaaagaagcacaaaaatgaa
gccaaaggtaagactgccgcaaaagcagacaacactacagctgaagaagacatcgacacc
ttgatttctgctgtagttaaagctgacaacacctgtggtttcccccggtgtaaagccagc
attgccaccttgggacagctttgcctgcattgtaacaaacgctactgcctcagccatcac
atcccagaggttcatgggtgtggggagaaagccaaagtgcatgcacggcagaggatcagc
aaagaaggggttctctacgctgggagtggatcaaaagacaagtctctggacccaaccaaa
agagctcacctgcagagacgcctcgataaaaagctgaatgaattaagcaaccagagaaag
agcaaaaagaaagaccaggagaaatga
DBGET
integrated database retrieval system
