Gavialis gangeticus (Gharial): 109299612
Help
Entry
109299612 CDS
T07453
Symbol
CDC40
Name
(RefSeq) pre-mRNA-processing factor 17
KO
K12816
pre-mRNA-processing factor 17
Organism
ggn
Gavialis gangeticus (Gharial)
Pathway
ggn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ggn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109299612 (CDC40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ggn03041
]
109299612 (CDC40)
Spliceosome [BR:
ggn03041
]
Complex C
Other components
Step II factors
109299612 (CDC40)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WDR55
EIF3I
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_TEP1_C
ANAPC4_WD40
WD40_RFWD3
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
Beta-prop_SPT8
Beta-prop_IFT122_1st
Beta-prop_SCAP
WDR90_beta-prop_4th
Beta-prop_NWD2_C
WD_LRWD1
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
109299612
NCBI-ProteinID:
XP_019375648
LinkDB
All DBs
Position
Unknown
AA seq
575 aa
AA seq
DB search
MSAAIAALASYGSDSESDKEDEGDARPLVASRDAVLHLRGPPAAPQPLPVDAAPDVAVKE
DVETGVHLDPAVKEVQYNPTYDTMFAPEFGPENPFRTQQMAAPRNMLSGYAEPAHINDFM
FEQQRRTFVTYGYALDPSIDNPEVATKYIGSVEEAEKNQGLTVFETGQKKTEKRKKFKEN
DASNIDGFLGPWAKYVDEKEVAKPSEEEQKELDEITAKRQKKGKQEDDKPGEEKTILHVK
EMYDYQGRSYLHVPQDVGVNLRSTVPPEKCYLPKKQIHVWSGHTKGVSAVRLFPLSGHML
LSCSMDCKIKLWEVYGERRCLRTFIGHSKAVRDICFNNAGTQFLSAAYDRYIKLWDTETG
QCISRFTNRKVPYCVKFNPDEDKQNLFVAGMSDKKIVQWDIRSGEIVQEYDRHLGAVNTI
VFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKWLACQSMDNQ
ILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFSPDMSYVISGDADGKLNIWDWKTTKLYS
RLKAHDKVCIGAVWHPHETSKVITCGWDGLIKLWD
NT seq
1728 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccgctatcgccgcgctggcctcctacggcagcgactctgagtcggacaaggag
gacgagggcgacgcgcggccgctggtggccagccgggacgccgtgctacacctgcgcggt
ccgcccgctgctccccagccactgcccgtcgacgccgccccggacgtggccgtaaaggaa
gatgtggagacaggagtccaccttgaccctgctgtcaaggaagttcagtataatcccacc
tatgacaccatgtttgcaccagagtttgggccagaaaacccatttaggactcaacagatg
gctgcacctaggaatatgctttctggatatgcagaaccagcacacatcaatgatttcatg
tttgagcagcagagaagaacatttgtaacctatggttatgcattagatccctctatagat
aatcctgaagttgccactaagtatattggttctgtagaagaagcggaaaagaatcaaggt
ttaacggtgtttgaaacgggacaaaagaaaacagaaaaaaggaagaaattcaaagagaat
gatgcatctaatattgatggcttcttgggtccgtgggcaaaatacgtggatgaaaaagaa
gtggccaaaccttcagaagaagaacagaaggagttggatgaaataacagcaaagagacag
aagaagggtaaacaggaagatgataagcctggagaagaaaagactatattacacgtcaaa
gaaatgtatgactaccagggaagatcatatcttcatgttcctcaagatgttggagttaac
ctccgttctacagtaccacctgagaaatgctatcttccaaagaaacaaatccatgtatgg
tctggacatacaaagggtgttagtgcagtcaggttatttccactctctggccatatgttg
ctgtcttgctccatggactgtaaaattaagctatgggaagtatatggtgaacgaagatgc
ctgcgaacattcattggacacagtaaagctgttcgagacatctgctttaacaatgctggg
actcagtttcttagtgcagcatatgaccgttatattaaactctgggacactgaaacaggg
cagtgtatttccaggttcacaaacaggaaagtcccttactgcgtaaaattcaatcctgat
gaagataaacaaaatctttttgtagcaggaatgtctgataagaaaattgtccagtgggac
attcgtagtggggagattgtacaggagtatgatcggcatctcggagctgtcaataccatt
gtgtttgtggatgagaatagacggtttgtgagtacttctgatgacaagagcttaagggtg
tgggaatgggacattcctgtagacttcaagtatatagcagagccaagtatgcactcgatg
cctgcagtgactttgtctccaaatgggaaatggctggcttgtcaatcaatggacaatcaa
attttgatttttggagctcagaatagattccgactaaacaaaaagaaaatcttcaagggt
catatggtggctggttatgcttgtcaagtggatttttcacctgatatgagctatgtaatc
tcaggcgatgcagatggaaaacttaacatatgggactggaagacaacaaaactctacagc
aggttaaaagcacacgataaagtttgtataggtgcagtctggcacccacatgaaacatcc
aaggtgatcacgtgtggctgggatggtcttattaaactgtgggactga
DBGET
integrated database retrieval system
