KEGG   Gavialis gangeticus (Gharial): 109300063
Entry
109300063         CDS       T07453                                 
Symbol
SDC1
Name
(RefSeq) syndecan-1
  KO
K06257  syndecan 1
Organism
ggn  Gavialis gangeticus (Gharial)
Pathway
ggn04512  ECM-receptor interaction
ggn04514  Cell adhesion molecule (CAM) interaction
ggn04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:ggn00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    109300063 (SDC1)
   04514 Cell adhesion molecule (CAM) interaction
    109300063 (SDC1)
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    109300063 (SDC1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:ggn04131]
    109300063 (SDC1)
  09183 Protein families: signaling and cellular processes
   04090 CD molecules [BR:ggn04090]
    109300063 (SDC1)
   00535 Proteoglycans [BR:ggn00535]
    109300063 (SDC1)
Membrane trafficking [BR:ggn04131]
 Exocytosis
  Calcium ion-dependent exocytosis
   Acrosomal exocytosis proteins
    109300063 (SDC1)
CD molecules [BR:ggn04090]
 Proteins
  109300063 (SDC1)
Proteoglycans [BR:ggn00535]
 Cell surface proteoglycans
  Syndecan family (transmembrane HSPG)
   109300063 (SDC1)
SSDB
Motif
Pfam: Syndecan
Other DBs
NCBI-GeneID: 109300063
NCBI-ProteinID: XP_019376215
LinkDB
Position
Unknown
AA seq 366 aa
MSPVSEKSTRGSGVGAIAWVLASWTMIRTSLQGTSCLQMAWIPCIESVWLGVLKAVHVAE
SLQEDLYNLSFSLKQTTDLNLPPEDLDSSGDDDNFSGSGAGPLSHSVEAIIPVGPTNSSI
DVDKLQTTVHYLHETGSPADEEVVAPSSSSDVVTDEPEADVQDETTYELVTFSAGAREEV
ITTNPATPSPSVKVTTSQVSSTADAVEPAIHSLDVVDFAEKEHDPIFTPASKEDVTTAAV
HTATTLRTSIPAHEDGEIVTSEDGSGDVGDFFISRNDEKLVDSDRNTDVDSERNSKAAGA
LGIMDRKEVLGGVIAGGLVGLLFAVFLVGFMLYRMKKKDEGSYSLDEPKQSNGGYQKPHK
QEEFYA
NT seq 1101 nt   +upstreamnt  +downstreamnt
atgtcacctgtgtcagagaagtcaacccgcggctccggagttggtgccatcgcatgggtt
ttggcttcgtggaccatgatccgcacttccctgcaagggacctcctgtctgcaaatggct
tggattccctgcatagagtctgtttggctgggagttttaaaggcagtgcatgtagcagaa
agtcttcaggaagacttatacaatctttctttctctctaaagcaaactacagatctgaac
cttcctcctgaagacttggactcatctggagatgatgacaatttctctggctcaggtgct
ggtccattgtctcactctgtggaggcaattattccagtaggacctacaaattcatccata
gatgttgacaaacttcaaacaactgttcactatctccatgagacgggaagcccagctgac
gaggaagtagtagctccatcctctagcagtgatgtggtgacagatgagccagaagcagat
gttcaggatgaaacgacatatgaactggtcaccttcagtgcgggtgcaagggaggaagtg
ataactacaaatcctgctactcctagtcccagtgtcaaagtaactacctcgcaagtctcg
agtacagctgatgccgtggaacctgccatccatagtcttgatgtggttgattttgctgaa
aaagagcacgatcccatctttacccctgcaagcaaggaagatgtcactacagctgctgtc
cacacagccactacccttaggactagcattccagcacatgaagatggagagattgtgact
tctgaggatggctctggagacgtgggagacttcttcatctctaggaatgatgaaaaacta
gtagactctgacaggaataccgatgttgactctgaaaggaatagtaaagctgcaggagcc
ttgggaataatggaccggaaagaagtcctaggaggtgtcattgctggaggattagtaggc
ctgctatttgcagtgttcctagttgggtttatgctgtacagaatgaaaaagaaagacgaa
ggaagctattcattggatgaaccaaagcagtcaaatggaggataccaaaaaccacacaaa
caagaagaattctatgcgtaa

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