Gavialis gangeticus (Gharial): 109300063
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Entry
109300063 CDS
T07453
Symbol
SDC1
Name
(RefSeq) syndecan-1
KO
K06257
syndecan 1
Organism
ggn
Gavialis gangeticus (Gharial)
Pathway
ggn04512
ECM-receptor interaction
ggn04514
Cell adhesion molecule (CAM) interaction
ggn04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ggn00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
109300063 (SDC1)
04514 Cell adhesion molecule (CAM) interaction
109300063 (SDC1)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
109300063 (SDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ggn04131
]
109300063 (SDC1)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
ggn04090
]
109300063 (SDC1)
00535 Proteoglycans [BR:
ggn00535
]
109300063 (SDC1)
Membrane trafficking [BR:
ggn04131
]
Exocytosis
Calcium ion-dependent exocytosis
Acrosomal exocytosis proteins
109300063 (SDC1)
CD molecules [BR:
ggn04090
]
Proteins
109300063 (SDC1)
Proteoglycans [BR:
ggn00535
]
Cell surface proteoglycans
Syndecan family (transmembrane HSPG)
109300063 (SDC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Syndecan
Motif
Other DBs
NCBI-GeneID:
109300063
NCBI-ProteinID:
XP_019376215
LinkDB
All DBs
Position
Unknown
AA seq
366 aa
AA seq
DB search
MSPVSEKSTRGSGVGAIAWVLASWTMIRTSLQGTSCLQMAWIPCIESVWLGVLKAVHVAE
SLQEDLYNLSFSLKQTTDLNLPPEDLDSSGDDDNFSGSGAGPLSHSVEAIIPVGPTNSSI
DVDKLQTTVHYLHETGSPADEEVVAPSSSSDVVTDEPEADVQDETTYELVTFSAGAREEV
ITTNPATPSPSVKVTTSQVSSTADAVEPAIHSLDVVDFAEKEHDPIFTPASKEDVTTAAV
HTATTLRTSIPAHEDGEIVTSEDGSGDVGDFFISRNDEKLVDSDRNTDVDSERNSKAAGA
LGIMDRKEVLGGVIAGGLVGLLFAVFLVGFMLYRMKKKDEGSYSLDEPKQSNGGYQKPHK
QEEFYA
NT seq
1101 nt
NT seq
+upstream
nt +downstream
nt
atgtcacctgtgtcagagaagtcaacccgcggctccggagttggtgccatcgcatgggtt
ttggcttcgtggaccatgatccgcacttccctgcaagggacctcctgtctgcaaatggct
tggattccctgcatagagtctgtttggctgggagttttaaaggcagtgcatgtagcagaa
agtcttcaggaagacttatacaatctttctttctctctaaagcaaactacagatctgaac
cttcctcctgaagacttggactcatctggagatgatgacaatttctctggctcaggtgct
ggtccattgtctcactctgtggaggcaattattccagtaggacctacaaattcatccata
gatgttgacaaacttcaaacaactgttcactatctccatgagacgggaagcccagctgac
gaggaagtagtagctccatcctctagcagtgatgtggtgacagatgagccagaagcagat
gttcaggatgaaacgacatatgaactggtcaccttcagtgcgggtgcaagggaggaagtg
ataactacaaatcctgctactcctagtcccagtgtcaaagtaactacctcgcaagtctcg
agtacagctgatgccgtggaacctgccatccatagtcttgatgtggttgattttgctgaa
aaagagcacgatcccatctttacccctgcaagcaaggaagatgtcactacagctgctgtc
cacacagccactacccttaggactagcattccagcacatgaagatggagagattgtgact
tctgaggatggctctggagacgtgggagacttcttcatctctaggaatgatgaaaaacta
gtagactctgacaggaataccgatgttgactctgaaaggaatagtaaagctgcaggagcc
ttgggaataatggaccggaaagaagtcctaggaggtgtcattgctggaggattagtaggc
ctgctatttgcagtgttcctagttgggtttatgctgtacagaatgaaaaagaaagacgaa
ggaagctattcattggatgaaccaaagcagtcaaatggaggataccaaaaaccacacaaa
caagaagaattctatgcgtaa
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