Gavialis gangeticus (Gharial): 109300253
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Entry
109300253 CDS
T07453
Symbol
FDFT1
Name
(RefSeq) squalene synthase
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
ggn
Gavialis gangeticus (Gharial)
Pathway
ggn00100
Steroid biosynthesis
ggn01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ggn00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
109300253 (FDFT1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
ggn01006
]
109300253 (FDFT1)
Enzymes [BR:
ggn01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
109300253 (FDFT1)
Prenyltransferases [BR:
ggn01006
]
Terpene biosynthesis
Squalene/phytoene synthase
109300253 (FDFT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SQS_PSY
HAUS4
DUF2951
Motif
Other DBs
NCBI-GeneID:
109300253
NCBI-ProteinID:
XP_019376463
LinkDB
All DBs
Position
Unknown
AA seq
415 aa
AA seq
DB search
MERVWRWLGRPAELCNLLRFRLAAASTPTGKDPLRASLRACYQHLNQTSRSFAAVIQALD
GELRHAVCIFYLVLRALDTIEDDMTISLETKVPMLHEFHSYLYQPEWRYTESKEKDKQVL
EDFPTISLEFRNLAEVYQDVITDICRKMGVGMAEYLEKKVNSVQDLDKYCHYVAGLVGIG
LSRLFSASELEDPIVGQDTELANSMGLFLQKTNIIRDYLQDQLEGREFWPREVWSRYAKK
LSDFAKPENADVAVQCLNELITNALHHVPDVLKYLSRLKNQSVFNFCAIPQAMAIATLAA
CYNNKQVFRGVVKIRKGQAVTVMMDATNVQAVKAIIYQYVEEIYQKIPSTDPSSNKTQQI
IATVRTMSLPSSTIVSRNHFSPIYLSCAMLLAALSWQYLSAMSKASEEYIQAGEN
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atggagcgcgtgtggcgctggctgggccgccccgccgagctctgcaacctgctgcgcttc
cgcctggccgccgccagcacccccacgggcaaggacccgctccgcgccagcctgcgcgcc
tgctaccagcacctcaaccagaccagccggagcttcgctgccgtcatccaggcgctggac
ggggagctgcgtcatgccgtttgcatattctatttggttctccgagccctggacaccata
gaagatgacatgaccatcagtttagaaactaaagtcccaatgctgcacgagttccactcc
tacctgtatcagccagagtggaggtacaccgaaagcaaggagaaggacaagcaagtactg
gaggacttccccacaatctccttggagttcaggaacctggctgaggtgtatcaggatgtg
atcactgatatttgtcgtaagatgggagtgggaatggcagagtacttggaaaagaaggtc
aactccgtgcaggatttggacaagtattgccactatgttgctggactggtagggattggt
ctttcccgtctcttctctgcttcggagcttgaagaccctatcgtaggacaggacacagag
cttgcaaattccatgggacttttcctgcagaaaaccaacatcattcgtgattatttgcag
gaccagctggagggacgggaattctggcccagagaggtttggagcagatatgccaagaag
ctctcggattttgccaaaccagagaatgctgatgtggctgtccagtgtctgaacgagctg
attacaaatgctctccaccatgtccctgatgttctcaagtacttgtccagacttaaaaac
caaagtgtcttcaacttctgtgctattccacaggcgatggccattgccacgctggctgct
tgttacaacaacaaacaagtgtttaggggtgtcgtgaagattcgaaagggacaagctgtt
accgtgatgatggatgccacgaatgtgcaggccgtcaaagctataatataccagtatgtg
gaagagatctaccagaaaatcccaagcacagacccttcttctaacaagacccagcagatc
attgccactgtccggacaatgagtttgcccagcagcaccattgtgtcccgtaaccatttt
tcccccatctacctatcctgcgccatgcttttggcagcgctgagctggcagtaccttagt
gcgatgtcaaaggcgtcagaggagtacattcaggccggcgagaactga
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