Gavialis gangeticus (Gharial): 109300376
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Entry
109300376 CDS
T07453
Name
(RefSeq) probable ATP-dependent RNA helicase DDX60
KO
K20103
ATP-dependent RNA helicase DDX60 [EC:
5.6.2.7
]
Organism
ggn
Gavialis gangeticus (Gharial)
Brite
KEGG Orthology (KO) [BR:
ggn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ggn03019
]
109300376
Enzymes [BR:
ggn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109300376
Messenger RNA biogenesis [BR:
ggn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
109300376
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
ResIII
Helicase_C
PhoH
DUF99
Motif
Other DBs
NCBI-GeneID:
109300376
NCBI-ProteinID:
XP_019376606
LinkDB
All DBs
Position
Unknown
AA seq
1152 aa
AA seq
DB search
MVVFDFPILVIKIVYFDLILPKSKAEIIAEENQKRIKAKQEKKEQEQWEALSMLIEKEIK
KNVAFGINRLENFLKKCQSRSVKFAAEMAGLRVCFEVWKEHCGKQGEKSKDLSIAVQVMR
RVHELLEKYEDLLQKSHQQMLAKCLNYLGFENLACSLSSQITERNNEKIAKYATEVGAAR
FQLQYMGSFLFRDERRDPDPRVHNFIPDTWQRELLDVVDNNESAVIVAPTSSGKTYVSYY
CMEKVLKESNEGVVVYVSPTKALVNQVVATIYNRFTKTLPHGIVICGVFTRDYRHDAMNC
QVLVTVPQCLEILLLSPHRQKWVKRIRYVIFDEVHCLGGEIGAEVWEHLLVMIQCPFLAL
SATISNPDYLTEWLQSVKRYWQQAEGRMKEEMSTSTMKHARTPKLQNPKKSDRVRLVLHG
ERYNDLEKYVCSVKDDDFVIEHYHPWAALTVNHIEKYGFPSDLALSPRESLQLYDTMVKV
WQNWPRAQDLDPEEFLSFKNKIVIKKADARNYEQELKKELTNWIALGQKDKVQELLECLK
PHPTDCPENEKRIKFCRFVEKLQAMDKLPAIFFMFNIHSVEQLATKIYVNLVRQNRRNQD
PNTEKEIENLRNKQEKMNKILENCKPTKSARQATTRKAESILIALEEKEQIEKRLAILTK
IPPEFTYANSKAVDEQTLKDIFLRLRWQRHASRQRLLAKRGIGYHHGSMTAKQKQFVEML
FRMGYIQVVTATSTLALGINMPCKSVVFSEDSVYLDALNYRQMSGRAGRRGQDLIGNVFF
YDIPMPKVEKLIKSNVPQLKGNFPFSISLVLRLMLLAAKADDKADAKAKVLSVLKHPLIA
FKQQRHNEMLKIYFIFSVQFLLKEGYLDQECKPMGFAGLVCHLHYHEPSNFVLVSFLVKG
LFHKLCQPIKGSTVFSENVMEELVLVLANLFGRIYLPACAMKFRKKFYQSKVFLEDLPED
FAAAVDEYNSKVEKNFACFLLTVAKLADTEQEYKLPLSKIDFTQKEYGHSKLASYLMSST
KSVTAVSPFMWLSGMTDQDLFAAEKVNKAVLHTVGVNIGNAPLLWREKHDYQGRRMPLNA
YALDFYKHGSLAALVKDNWLHEGDAYKLLKDFLLVIKSVRVSLGELCDNPDDNVVLAFQQ
LSESYEAKLQKV
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atggtagtttttgattttcctatattagtaataaagatagtctactttgatctgatcctg
ccaaaaagtaaagcagaaataattgcagaagaaaaccagaagcggataaaagctaagcag
gaaaagaaagaacaggaacaatgggaggccctgtctatgttaattgaaaaggaaattaaa
aaaaatgttgcctttggaataaacagactggagaatttcctcaagaaatgtcagtctcga
tctgtgaaatttgcagcagaaatggcaggattgcgtgtgtgttttgaagtttggaaagaa
cactgtggaaagcaaggtgaaaagtccaaagatctaagtatagctgttcaagtgatgaga
agagttcatgagcttcttgaaaaatatgaggacctattacagaaatcacatcaacaaatg
ttggccaagtgtctgaactaccttggatttgagaatttggcatgctctttatccagccag
atcacagaaagaaataatgagaaaattgccaaatacgctactgaagtaggagcagctcgt
tttcaattacaatatatgggttctttcttgttcagagatgagaggcgtgatccagatccc
agagtacacaattttataccagacacatggcagcgagaacttcttgatgttgtggacaat
aatgagtctgcagtgatagttgctcctacttcatctgggaaaacctatgtatcatactat
tgcatggagaaagttctgaaagaaagtaatgaaggagtagttgtgtatgtttctccaaca
aaggcccttgttaaccaagtagtggcaactatatataatcgattcaccaagacactgcct
catggaatagtaatatgtggagttttcacaagggattatcgccatgatgccatgaactgt
caggtactagtgacagtgcctcaatgtttggaaatcttgttgttgtctccacatcgccag
aaatgggtgaaaagaataagatacgttatatttgatgaggtacattgtctaggtggagaa
attggagctgaagtttgggagcaccttttggttatgattcagtgtccatttctggctctg
tctgcaactatcagtaatccagattatcttactgagtggcttcaatcagtaaaaagatac
tggcagcaagctgagggtagaatgaaagaagaaatgtctacatctaccatgaaacatgca
aggacaccaaagctacaaaaccccaaaaaatcagatagagttagattagtgctgcatgga
gaaagatacaatgatctagaaaagtatgtgtgttctgttaaggatgatgattttgtcatt
gagcactatcacccatgggctgccctaacagtgaatcatattgagaaatatggttttcct
tcagatcttgccttatctcccagggagagccttcagctatatgacacaatggtaaaagtc
tggcagaattggccaagagcacaggacttggatcctgaggagtttctctctttcaagaat
aaaatagtaataaaaaaggcagatgcaaggaactatgaacaggaactgaagaaggaacta
actaactggattgcacttggtcaaaaggataaggtgcaggagcttctggagtgtcttaaa
cctcaccccactgattgtccagaaaatgaaaagcggatcaaattttgtcgttttgttgaa
aaattacaagccatggataaactgcctgccatattttttatgtttaacattcattcagta
gaacaactggccacgaaaatatatgtaaatttggtaagacagaacaggaggaatcaagat
ccaaatactgagaaagaaatagaaaatttaagaaataaacaggaaaaaatgaataaaatc
ttggagaattgcaaacccactaaatcagcaagacaggctaccaccaggaaagcagaaagt
atactaattgccttggaggaaaaggaacaaatagagaagagacttgcaatccttactaaa
atccctccagagtttacttatgctaattctaaagctgtggatgaacaaaccttgaaggat
atctttttacgactaaggtggcagagacatgcttctcgtcagagattgttggcaaaacgt
ggtattggatatcatcatggttctatgactgccaaacaaaaacaatttgtggaaatgctg
ttcaggatgggatatatccaggtggtcacagctacttcaacgttggccttaggcatcaat
atgccatgtaaatctgttgtcttctctgaagattctgtctatttagatgcactaaattat
agacagatgtctggccgtgctggaagacgtggacaagatttgataggaaatgtgttcttc
tatgatatcccgatgcccaaggttgaaaaacttataaaatccaatgtacctcaactgaaa
ggcaatttccctttcagtatttccctggtgctaagactcatgctattggcagcaaaagca
gatgacaaagcggatgccaaagcaaaggtgctgtcagtgttgaagcatccattgatagca
ttcaaacaacagaggcataatgaaatgttaaaaatatacttcatcttttctgtgcagttt
cttctcaaagagggatatctggatcaagaatgtaaacccatgggatttgctggacttgta
tgccatttacattatcatgagccttcaaactttgtcctagtcagctttcttgtcaaagga
ttattccacaaattgtgccagccaattaaaggttcaactgttttctctgaaaatgtgatg
gaagaattagtgttagtgttagcaaacctatttggaaggatatatttaccagcttgtgct
atgaagtttaggaagaagttttatcagtcaaaggtgtttctagaagatctcccagaagac
ttcgctgcagcagttgacgaatacaacagcaaagtagaaaaaaattttgcttgctttctt
ctaacagttgccaagctggctgacacagaacaggaatataaactccctttgtcaaagata
gattttacacaaaaagaatatggtcactccaaactggcctcttatttgatgagcagcaca
aaaagtgtaactgcagtctctcctttcatgtggctgtctggaatgactgatcaggattta
tttgctgctgaaaaggttaacaaagctgttttacatacagttggtgttaatattggaaat
gctcctttgctttggcgggagaagcatgactatcaaggaagaagaatgccactcaatgct
tatgcacttgatttctataagcatggctccttggctgctctggtaaaagacaactggtta
catgaaggggatgcttataaactgcttaaggattttttgcttgtcattaaatctgtcaga
gtatcacttggtgaactttgtgacaatccagatgacaatgttgtactggcatttcaacaa
ctgagtgaaagttatgaagcaaaactacaaaaagtttaa
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