Gavialis gangeticus (Gharial): 109300744
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Entry
109300744 CDS
T07453
Symbol
COL4A5
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
ggn
Gavialis gangeticus (Gharial)
Pathway
ggn04510
Focal adhesion
ggn04512
ECM-receptor interaction
ggn04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ggn00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
109300744 (COL4A5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
109300744 (COL4A5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
109300744 (COL4A5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ggn04147
]
109300744 (COL4A5)
00536 Glycosaminoglycan binding proteins [BR:
ggn00536
]
109300744 (COL4A5)
Exosome [BR:
ggn04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
109300744 (COL4A5)
Glycosaminoglycan binding proteins [BR:
ggn00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
109300744 (COL4A5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
109300744
NCBI-ProteinID:
XP_019377088
LinkDB
All DBs
Position
Unknown
AA seq
1697 aa
AA seq
DB search
MRLAARSPGASLAAGCLLLLGLCGRAADAAACHGCTSSSKCDCSGVKGEKGERGFPGLEG
QPGLPGFPGPEGPPGPRGGQGDDGLPGPVGPKGIRGPPGLPGFPGTPGLPGLPGQDGPPG
PPGIPGCNGTKGEHGFPGSPGFPGLQGPPGPPGFPGMKGEPGEIIMSSLPGQKGDPGFPG
LPGIPGPPGPIGTSGPIGPPGPPGFTGPPGPPGLPGPKGNMGLNFQGPKGEKGERGLQGP
PGPPGQIGEQKRPNDVEFQKGDQGAPGERGPPGPPGPQGPPGPPGGMKGEKGEPGEPGKR
GKPGKDGEPGQPGRNGSPGEPGINGEPGRDGEKGEKGESGLPGAPGRIISRPGNGATVGP
KGSKGLSGLPGSKGERGYPGLPGPPGLPGPPGITTPGPPGPPGLPGERGQKGDQGLPGIS
IPGQPGLDGQPGPPGPPGPPGRPGSAVPSRNGLCEPGVPGPPGPPGDQGFMGEQGQKGDK
GDTCFNCIGNGISGPPGERGPFGPPGSPGPPGFPGPKGEKGLPGLAGLEGQRGFPGSPGA
PGRPGPKGDPGDILAFPGMKGEKGDPGFPGPPGLPGIDGSPGRDGLPGLPGPKGESGSVV
FKGEMGPRGDPGVPGLPGERGPMGPPGFGPQGPLGEKGIQGVSGRPGPPGVPGPKGEPGQ
TLTEQGVPGAPGPPGRNGEPGLPGDPGQPGQPGLPGIPGAKGEPGLPGIGLPGPPGPKGF
PGVPGPPGAPGSPGRPGLDGPPGQPGFPGQKGERGFGVPGPPGPPGPVGPKGLLGPKGDP
GFPGSPGLPGRAGFDGAPGPKGDPGPSGSPGLPGPPGFPGIGGQGPPGPPGPPGPSGPSG
DPGPQGVPGEKGDPGPPGFDIPGPPGDRGVPGFPGPPGLLGPPGPPGPPGRDGIPGFAGA
KGEMGVMGAPGPQGPPGIPGRNGLPGPKGNDGLPGQPGSPGFDGLKGVKGETGLPGAPGK
VDPSQLGSKGEKGEPGVPGISGIPGQKGYQGLPGDPGPPGLNGQSGAPGLPGLKGEPGLP
GQPGLTGPPGPKGAMGEMGLPGPQGIKGSQGTAGRPGPSGPPGFPGLKGEKGDPGLSDIG
IPGLPGPKGDPGLPGYPGSPGSKGVAGNPGLPGLPGSAGTKGEPGLPGFSGTPGIPGPKG
IDGPPGNPGLPGSPGPSGDVGRPGPPGPPGEKGQPGRDGIPGPAGQKGEPGLPGFGRPGP
PGLPGLSGQKGEMGLPGPPGVPGRPGLKGEPGFQGFPGPQGPAGLPGPPGPPLEGPKGSP
GPQGIPGASGPSGPPGPPGPEGPRGPPGSGGLQGEKGNPGPPGQPGLPGLKGEQGPHGRQ
GDPGRPGLNGMKGDPGVPGVPGFPGMKGPIGPPGPVGLTGSQGPAGPPGPPGLPGPTGQT
IVYKGDPGPPGAPGQPGSKGPPGLPGPQGLPGPIGFPGDAGRDGLPGFDGPAGRKGDKGL
PGHPGSRGTQGPPGPDGLQGPPGPPGAASVAHGFLITRHSQTTDAPLCPQGTARLYDGFS
LLYVQGNERAHGQDLGTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPEQMPMS
MDPLTGKSIQPFISRCVVCEAPAMVIAVHSQTIQIPSCPLGWDSLWIGYSFMMHTSAGAE
GSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATVEMSEMFSKPQSETLKA
GDLRTRVSRCQVCMKRT
NT seq
5094 nt
NT seq
+upstream
nt +downstream
nt
atgaggctggctgcgcggagccccggggccagcctggcagccggctgtctgctgctgctg
gggctgtgcgggcgggctgcggacgccgcggcttgccatggatgtacatcatcatccaaa
tgtgactgtagtggtgtcaaaggtgaaaagggtgagaggggattcccaggtttagaaggt
cagccaggtttacctgggtttccaggaccagagggaccccctggccctagaggtggacag
ggtgatgatggacttccagggcctgttggacccaaaggaatcagaggacctccaggactt
ccaggatttccaggaacaccaggacttcctgggttaccagggcaagatgggccaccagga
cccccaggtatcccaggatgcaatggaacaaagggagaacatggattcccaggaagtcca
ggttttccaggtttacaaggccctcctggaccccctggctttccaggtatgaagggtgaa
cctggtgaaataattatgtcctcacttccaggacagaaaggtgacccaggattcccaggt
cttccggggataccaggtccacctggtcccattggtacgtcaggcccgattggtcctcct
gggccaccaggtttcacgggccctcctggtccaccagggcttccaggacctaagggtaat
atgggattgaattttcaaggacccaagggtgaaaagggtgaacgaggccttcagggacct
cccggacctccaggacaaataggagaacagaaaagaccaaatgatgttgagttccagaaa
ggagatcagggtgcaccaggtgaacgcggtccaccaggaccccctgggccacaaggtcct
cctggtccccccggtggcatgaaaggcgaaaaaggtgagccaggagaaccaggcaaaaga
gggaaacctggcaaagatggagaacctggccagcctggtagaaacggttcacctggtgag
ccaggtataaatggggagccaggaagagacggggaaaagggtgagaaaggtgaaagtggt
ctgcccggtgctcctggaaggatcatttcaagaccaggaaatggtgcaacagtgggacca
aaaggtagcaaaggattgtcaggtcttccaggctccaaaggggaacgtggatatcctggc
ttgccaggtcctccaggattgccaggtcctccaggaatcacaactcctggccctcctggc
ccacctggattgccaggtgagagaggacagaagggagatcagggtttaccgggaatttcc
atacctggacagcctggacttgatggacaacctggaccacctggaccgccaggtccccct
ggacgtcctggatcagctgttccttctcgaaatggattatgtgagccaggggtcccaggt
cctccaggtcctccaggagaccaaggctttatgggggagcaaggccagaaaggtgataag
ggagatacatgcttcaactgtataggaaatggcatatcagggcctcctggggagagggga
ccatttggacctccaggtagcccaggacctcctggtttccctggaccaaaaggtgaaaaa
ggacttcctggcttagccgggctggaagggcaacgaggatttccaggatctccaggtgcc
cctgggcgacctggtcccaaaggggacccaggggacatcctcgcttttccaggaatgaag
ggtgaaaaaggagaccctggtttcccaggacctccaggtcttcctggtatagacgggtct
cctggacgagatggactgccaggtcttcctggacccaaaggggagtctggtagtgttgtc
ttcaaaggggaaatggggcctcgaggtgatccaggagtaccaggtcttcctggagagagg
ggacctatgggacctcctggttttggccctcaaggtccactgggtgaaaaaggcattcag
ggtgtatctggtcgtccaggccccccaggagttcctggtccaaaaggtgaacctggtcag
actcttacagaacaaggagttccaggtgcccctggtcctcctggcagaaatggtgaacca
ggtcttccaggtgaccctggtcagccaggtcaacctggcttaccaggcatcccaggtgca
aagggagagccaggtctgcctggcattggacttccaggcccaccggggccaaaaggtttc
cctggagtgcctggtccccccggagcaccaggaagccctggacgacctggtctagatggg
ccacccggacagcctggtttcccaggacagaagggggaacgtggatttggtgtcccagga
cccccaggacccccagggccagtgggtccaaaaggactactgggacccaaaggggatcct
ggctttccaggaagccctggtcttccaggacgggcaggttttgatggagctccagggcca
aaaggtgaccctggaccaagtggatcaccagggctcccaggtccaccagggttcccaggc
attggtggtcaaggtccacccggaccacctggacctccaggaccttcagggccatcaggt
gacccaggaccccagggtgttccaggggagaagggggatcctggtcccccagggttcgac
attcctggtcctccaggtgacagaggtgttccaggatttcctggacctcctggtcttctg
ggtccaccaggtccaccaggtccaccgggacgggatggaataccaggatttgcaggtgcc
aaaggtgagatgggtgtaatgggagctccaggtccacaagggcctcctggcattcctgga
cgaaatggccttcctggccccaaaggcaatgatggtttaccaggtcagccaggatcacct
ggatttgatggactcaaaggtgtcaaaggtgaaacaggcctcccaggtgcccctgggaag
gttgatccaagtcagctgggatcaaaaggagagaagggtgagccaggtgtcccaggtatt
tctggaataccaggtcagaaaggttatcaagggctccctggtgacccagggccacctggc
cttaatgggcaatcaggtgcaccaggattaccaggcctgaaaggagagcctgggctgcca
ggacaaccaggactaacaggccctccaggaccaaaaggtgccatgggagagatggggctt
ccagggccccaaggtattaaaggctcccaaggaacagcaggacgccctggcccatctggt
cctcctggatttcctgggttaaagggagagaaaggtgacccagggctttcggacattggc
atcccaggcctccctggtcccaagggggatcctggtttgcctggataccctggtagccct
ggcagcaaaggagtagctggaaatcctggtttgcctggattgccaggcagtgctggtaca
aaaggagaaccaggccttcctggattttcaggaacaccaggaattccaggaccaaaagga
attgatggacctccgggtaatcctggtctgcctgggtcgcctgggccatcaggtgatgtt
ggccgccctggccctccaggtcctccaggagagaaaggacaaccaggtcgagatggtatt
cctggaccagctggacagaagggtgaaccgggtctcccaggttttgggcgcccaggacct
ccaggactcccaggattatcagggcagaagggtgaaatgggattgcctggtcctccagga
gtccctggacgtccaggtctaaagggtgaaccaggtttccagggattccctggtcctcaa
ggtccggcaggtctaccaggcccccctgggccacctctggaaggtcctaaaggtagtcct
ggcccccaaggcataccaggagcatcaggtccctcaggtcctccaggtcccccaggtccg
gaaggtccccgaggaccccctggaagtggaggacttcaaggagaaaaaggaaacccaggt
ccacctggccagcctggcctgcctggtctaaaaggagaacaaggaccccatggtcgtcag
ggtgatcctggtcgtcctggtctgaatggaatgaaaggtgaccctggggttccaggcgtt
ccaggttttccaggtatgaaggggcccattggacctccaggaccagtcggccttacaggt
agtcagggcccagcaggcccaccaggtccaccaggtttacctggccccactggacaaacc
attgtatataaaggtgatccaggtcctccaggtgctccaggccaacctggatccaaaggg
ccacctggattgccaggcccacaaggacttccaggcccaataggatttcctggggatgct
gggcgagatggactccctgggtttgatggtccagcagggcgcaaaggtgacaaaggactt
cctggccatccaggttcacgaggtacacaggggccccctggtccggacggcttgcaaggc
ccaccaggtcctcctggagcagcctctgttgctcatggattcctgataactcgacacagc
cagacaacagatgcgccattgtgcccacaaggaacggcaaggctgtacgatggattttct
cttctctacgtccagggaaatgagagagcccatggccaggacttgggcactgccggtagc
tgtctgcgcaggttcagcaccatgcccttcatgttctgtaacatcaacaatgtttgcaat
tttgcatcaagaaatgactattcctactggctatctactccagaacaaatgcctatgagc
atggacccactgactgggaagagcatacagccattcattagccgatgcgtagtatgtgaa
gctccagccatggtcatagcagtccatagtcagaccattcaaataccatcgtgtccacta
ggatgggattctctttggattggttattctttcatgatgcacacaagtgcaggtgcagag
ggctctggacaggccttagcatctccaggatcctgtttggaagaatttcgctcagcccct
tttatcgagtgtcacggtcgtggtacttgtaattactatgccaactcatacagtttctgg
ctggcaactgtagagatgtcagaaatgtttagtaaacctcagtcagagacactgaaagct
ggagacctgaggacacgtgttagccgttgtcaagtttgtatgaagaggacgtaa
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integrated database retrieval system
