Gavialis gangeticus (Gharial): 109301066
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Entry
109301066 CDS
T07453
Symbol
COL25A1
Name
(RefSeq) collagen alpha-1(XXV) chain
KO
K24356
collagen type XXV alpha
Organism
ggn
Gavialis gangeticus (Gharial)
Brite
KEGG Orthology (KO) [BR:
ggn00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ggn00536
]
109301066 (COL25A1)
Glycosaminoglycan binding proteins [BR:
ggn00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
109301066 (COL25A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
109301066
NCBI-ProteinID:
XP_019377503
LinkDB
All DBs
Position
Unknown
AA seq
656 aa
AA seq
DB search
AALLSVLAAASCVYLGLRTSQLQARVSAIESAHGGFSAAAAASRLLPGCSLDQLQSVVQE
KVERLLAQKSYEHLAKIRIAREVPPECNCPPGPPGKRGKRGRRGETGPPGLPGRNGYPGP
IGMDGKLGQPGSQGPPGPKGEKGDQGDQGPRMVFPKINHGFLSADQQLIKRRLIKGDQGQ
AGPPGPPGPPGPRGPPGDTGKDGPRGMPGVPGEPGKPGEQGLLGPQGPPGQKGSLGVPGI
PGKDGQMGDPGLPGAVGERGTPGLKGDPGERGEKGDAGENGPKGAMGEKGDPGSSAAGIK
GEPGESGRPGQKGEPGLPGLPGLPGIKGEPGFIGPQGEPGLPGLPGTKGEKGESGPPGKG
ERGEPGAAGPKGKTGEPGTRGPKGSKGDTGDKGDTGALGPRGPPGQKGDQGATEIIDYNG
NIHEALQRITTLTVTGPPGPPGPQGLQGLKGEPGSPGIPGADGDQGPKGSKGDMGEPGMS
GEKGGIGLPGLPGANGMKGEKGDVGLPGPQGPSIIGPPGSPGPHGPPGPMGPHGLPGPKG
EPGLNGLKGLKGEPGQKGDRGPLGLPGASGLDGKPGPRGIDGPIGPHGPAGPKGDRGEKG
AVGDPGPRGPYGLPGEKGKKGKKGPKGEKGEQGAPGLDAPCPLGPDGLPMPGCWQK
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
gccgcgctgctctcggtgctcgcggccgcttcctgcgtgtacctggggctgaggaccagc
cagctccaggcccgggtctcggccatcgagagcgcccacgggggcttctctgccgccgcc
gccgcctcccgcctgctgcccggctgctccctggaccagctccagtccgtggtgcaagag
aaagtggagcggctcctcgctcagaaatcctatgagcatttggcaaaaataagaatagca
agagaagtgcctccagagtgcaactgtccaccaggccctccagggaaacgaggtaagagg
ggcagaagaggagagacaggacctcctggtctaccagggcgaaatggctatccgggtccg
attggtatggatggaaagctgggtcaacctggttctcaaggtcctcctggtccaaaaggg
gagaagggagatcaaggtgatcagggccctcggatggtgtttcctaaaatcaatcatggg
tttctctctgctgatcagcagctcattaaacgccgcctcattaagggggaccaaggacag
gctggaccccctggtcctccagggccaccaggaccccgaggtcctccaggagatactggg
aaagatggcccccgagggatgcctggagtaccgggagagccaggaaaaccaggcgagcaa
ggattgctgggacctcaggggcctccaggacaaaaggggtctcttggagtgcctggtatt
ccaggaaaggacggacaaatgggtgatccaggtttgcctggtgcggttggagaaagggga
acgcctggacttaagggggatccaggagaacgcggagaaaagggtgatgctggagaaaat
ggacccaaaggtgccatgggtgaaaagggtgaccctggatcatctgccgcaggaattaag
ggagaacctggagaatctggtcgtccaggacaaaagggtgaaccaggtctccctgggctt
cctggactccctgggataaagggtgagccaggtttcattggtccacagggagaacctggg
ctaccaggattaccaggaacaaagggtgagaaaggggagtcaggacctcctgggaaaggt
gaacgaggtgaacctggagctgctggaccaaaggggaaaacaggcgaacctggaactaga
ggcccaaaggggtcaaagggtgacactggtgacaaaggtgatacaggtgcactaggtcca
aggggcccacctggacaaaagggtgatcaaggtgcaacagagatcattgactataatggc
aacatccatgaagctctgcagaggattactactctaactgtcacgggtccaccagggcca
ccaggacctcaaggactacaaggactaaagggtgaaccaggatccccaggaattccagga
gctgatggggatcagggtccaaaaggctcaaagggagacatgggtgagcctggcatgtca
ggagaaaagggtggaattggactgcctggcttaccaggagccaatggtatgaaaggagaa
aaaggagatgttggtttgccgggtcctcaaggtccttctatcataggaccacctggatca
ccaggtccacatggtccaccaggccctatgggaccccatggactgcctggcccaaagggt
gaaccagggttgaatggtcttaaaggattgaagggtgaaccaggtcaaaagggtgacaga
gggcccctgggtcttccaggagcatctggcttagatgggaagccaggaccccggggtata
gatggcccaattggtccacatggcccagcaggtcctaaaggagacagaggtgaaaaggga
gctgtaggtgaccctggacccagaggaccatatggtttgcctggggaaaagggaaagaaa
ggcaaaaaggggcctaaaggggagaaaggagaacagggtgcccctggattagatgcacct
tgcccattggggccagatggattaccaatgcctggctgttggcaaaagtga
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