Gavialis gangeticus (Gharial): 109301308
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Entry
109301308 CDS
T07453
Symbol
PRPF40A
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
ggn
Gavialis gangeticus (Gharial)
Pathway
ggn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ggn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109301308 (PRPF40A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ggn03041
]
109301308 (PRPF40A)
Spliceosome [BR:
ggn03041
]
Complex A
U1 snRNP components
U1 related factors
109301308 (PRPF40A)
Complex B
109301308 (PRPF40A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FF
FF_PRPF40A
WW
WW_TCERG1
FF_RHG35_4th
WW_2
Motif
Other DBs
NCBI-GeneID:
109301308
NCBI-ProteinID:
XP_019377948
LinkDB
All DBs
Position
Unknown
AA seq
929 aa
AA seq
DB search
MGHPGMPHYPPMGMHPMGQRPPNMPPVPHGMMPQMMPPMGGPPMGQMPGMMQSVMPGMMM
SHMSQAAMQPTVPPGVNSMDTQAGSGSGKYLSTSSLHWKLSTMEGTTPPGTQTAHPVVCS
AQQTTTVNSSVTEDQSKQKSVWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSK
CPWKEYKSDSGKPYYYNSQTKESRWAKPKELEDLEAMIKAEENSSKPEESTPTTSTAAVA
TEVTNTTTTTTTSAAAETAVAATATTATPAATAASESETASTTSSAAATGSVTATAAENE
STGTATADEQVQQTNATPVVQEQNAETVTNTVEEGFKQEGSADATPKKEEDDAQPVKKTY
TWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQT
EKEEKEEARSKYKEAKESFQRFLENHDKMTSTTRYKKAEQMFGEMEVWNAISERDRLEIY
EDVLFFLSKKEKEQAKQLRKRNWEALKNILDNMANVTYCTTWSEAQQYLMDNPTFAEDEE
LQNMDKEDALICFEEHIRALEKEEEEEKQKSLLRERRRQRKNRESFQIFLDELHEHGQLH
SMSSWMELYPTISSDIRFTNMLGQPGSTALDLFKFYVEDLKARYHDEKKIIKDILKDKGF
IVEVNTTFEDFVAVISSTKRATTLDAGNIKLAFNSLLEKAEAREREREKEEARKMKRKES
AFKSMLKQAAPPIELDAVWEDIRDRFVKEPAFEDITLESERKRIFKDFMHILEHECQHHH
SKNKKHSKKSKKHHRKRSRSRSGSESEDDDNHSKKKRQRSESRSVSERSSSVESERSYKK
TKKHKKKSKKRRHKSDSPESDAEREKDRKGERENEKDRSRQRSESKHKSPPKKRPGKDSG
NWDTSGSELSEGELEKQRRTLLEQLDEDQ
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atgggtcacccaggcatgcctcactatccacccatggggatgcaccccatgggccagaga
ccaccaaatatgccaccagttccacatggtatgatgcctcagatgatgcctccaatggga
ggaccaccaatggggcagatgcctggaatgatgcagtcagtgatgccaggaatgatgatg
tcccatatgtcccaagctgccatgcagccaacggtcccgccaggagtgaatagtatggat
acgcaagcagggtctggttcaggaaaatacttaagcacatcgagtctccattggaagtta
agcacaatggaaggtacaacacctccaggaactcagactgcacatccagtagtctgttca
gcccagcaaaccaccacagtcaacagttcggtaactgaagaccagtctaaacagaaatct
gtatggactgaacataaatcacctgatggaagaacttattattataatactgaaacaaag
caatccacatgggagaaaccagatgatcttaaaacacctgctgagcaattattatctaaa
tgtccttggaaagagtacaaatctgattcaggaaagccttactactataattcccaaaca
aaagagtcacggtgggcaaaacctaaagaacttgaggatcttgaagcaatgattaaagca
gaagaaaacagcagcaaaccagaagaatcaactccaactacatctacagctgctgttgca
acagaagtaaccaatacaacaaccaccaccaccacttctgcagctgctgaaactgctgta
gctgctactgcaactactgccacccctgctgcaacagctgcctcagaaagtgaaactgct
tctactactagttctgcagctgctactggtagtgttactgcaactgctgcagaaaatgaa
agtacaggtacagctacagctgatgaacaagtgcagcaaaccaatgctactcccgttgta
caggaacagaatgcagaaactgtcacaaacacagtagaggaaggttttaagcaggagggt
tcagcagatgctactcccaaaaaagaggaggacgatgcccagccagttaaaaaaacatat
acgtggaatacaaaagaagaagcgaaacaagcatttaaagagcttttgaaagaaaagcgt
gtaccctccaatgcctcctgggaacaagctatgaaaatgatcattaatgatccaagatac
agtgctttggcaaagttgagtgaaaaaaagcaagcctttaatgcttacaaggttcagaca
gaaaaggaagaaaaagaagaagccagatcaaaatacaaagaagctaaagaatctttccag
cgttttcttgaaaaccatgacaagatgacatctacaacaagatataaaaaagctgaacaa
atgtttggagagatggaggtctggaatgcaatatcagagcgtgatcgtcttgaaatttat
gaagacgtgttgttctttttatctaagaaagagaaggaacaagccaagcagttgcgaaaa
aggaattgggaggctctaaaaaacatactggataacatggctaatgtaacttattgtacc
acttggtcagaggctcagcagtatctgatggacaaccctacatttgcagaagatgaggaa
cttcagaatatggataaagaagacgccctcatctgttttgaagaacacatcagggctctg
gagaaagaggaggaagaagaaaaacaaaagagtttgctgagggaaaggcgccgacagcgt
aaaaatagagaatcttttcagatatttttggatgaattgcatgaacatgggcagttgcat
tcaatgtcttcttggatggagttgtatccaaccataagctctgatatcagattcactaat
atgcttggccaacctggatcgactgcacttgatcttttcaaattttatgttgaagatttg
aaagcacgctaccacgatgaaaagaagataataaaagacatcttaaaggataaaggattt
atagttgaagtgaatacaacttttgaagactttgttgcagtcatcagttcaactaaaaga
gctacaaccttagatgcaggcaatatcaaactggctttcaatagtctcctggaaaaggca
gaagcccgtgaacgtgaaagggaaaaagaggaggctcggaagatgaagcggaaggagtct
gcattcaagagtatgttgaaacaagctgcacccccgattgagttggatgctgtttgggaa
gatatcagggacagatttgtgaaggaaccagcatttgaagacattactttagaatcagaa
agaaaaagaatatttaaagacttcatgcacatattagagcatgagtgtcagcatcatcat
tcaaagaacaagaaacattctaaaaaatctaaaaaacatcaccgaaagcgatcacgctcc
cgttcgggctcagagtctgaagatgatgataaccattcaaaaaagaagaggcagcgttca
gaatctaggtctgtttctgagcgttcttccagtgtagaatctgagagaagttataagaaa
acaaaaaaacacaagaagaaaagcaaaaagagaagacacaagtctgattcaccagaatca
gatgctgaacgagaaaaagacaggaaaggggagagagagaatgaaaaggatagaagtaga
caaagatctgaatcaaagcataaatctcctcccaaaaaacggcctggaaaagattctggt
aactgggatacttccggcagtgaactgagtgaaggggaattggaaaaacagagaaggacc
cttttggaacaactggatgaagatcaatga
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