Gavialis gangeticus (Gharial): 109301835
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Entry
109301835 CDS
T07453
Symbol
COL5A2
Name
(RefSeq) collagen alpha-2(V) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
ggn
Gavialis gangeticus (Gharial)
Pathway
ggn04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ggn00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
109301835 (COL5A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ggn00536
]
109301835 (COL5A2)
Glycosaminoglycan binding proteins [BR:
ggn00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
109301835 (COL5A2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
109301835
NCBI-ProteinID:
XP_019378624
LinkDB
All DBs
Position
Unknown
AA seq
1501 aa
AA seq
DB search
MMASWMQTRTFLILAALLGQFVTIKAQEDEDYGGEEDGEEVACTQNGQMYLNRDIWKPSP
CQICVCDNGAILCDEIQCQDVLECENPQVPPGECCPVCSHTSRSFDTNVGRGRKGEKGEP
GIVPIVTGIRGRPGPSGPPGSQGPRGERGPKGRPGARGPPGMDGEPGIPGQPGDPGPPGH
PTHPGPDGVSRPFAAQMAGLDEKTGLGSHMGLMPGAVGPVGPRGPQGLQGKQGGPGPTGP
PGEPGEPGPMGPVGSRGPEGPPGKPGEDGEPGRPGQGGEVGFPGSPGTRGFPGAPGLPGL
KGHRGHKGLDGPKGETGALGAKGESGPPGAMGATGPLGPRGMAGERGRIGPQGAPGGRGT
HGMPGKPGPMGPLGLSGSPGFPGIPGMKGDAGPTGPRGPEGPQGQRGETGPQGPQGSSGL
PGTEGTDGSLGAKGPTGSPGTSGPPGLSGPPGSPGPQGSTGPPGIRGQAGDPGVPGFKGE
AGPKGEPGPQGSQGPIGPLGEEGKRGPRGDPGSVGPPGPVGERGAPGNRGFPGSDGLPGP
KGAQGERGPAGSSGPKGGQGDPGRPGEPGLPGARGLTGNPGVQGPEGKLGPLGAPGEDGR
PGPAGSIGIRGQPGSMGLPGPKGSSGDPGKPGEAGNAGVPGQRGAPGKDGEVGPSGPVGP
PGLAGERGEQGPPGPTGFQGLPGTPGPPGEGGKPGDQGVPGDPGAVGPLGPRGERGNPGE
RGEPGAPGLQGEKGMAGGHGPDGPKGNPGPTGTPGDPGPPGLQGMPGERGIAGTPGPKGD
RGGMGEKGAEGTAGNDGARGLPGPLGPMGPAGPTGEKGESGPRGLVGPPGSRGNPGSRGE
NGPTGAVGFAGPPGPDGQPGVKGEPGEPGQKGDAGSPGPQGLAGSPGPPGPSGVPGLKGG
RGTQGPPGATGFPGSAGRVGPPGPTGAPGPAGPIGEPGKEGPPGLRGDPGSHGRVGDRGP
AGPPGGPGDKGDAGEDGQPGPDGPPGPAGTTGQRGIVGMPGQRGERGMPGLPGPAGTPGK
QGPTGPPGDKGPPGPIGQSGATGPVGEPGPEGPAGNDGTPGRDGAVGERGDRGEPGPSGL
PGAQGAPGTPGPVGPQGDAGQRGEVGSRGPMGPPGRAGKRGLPGPQGPRGDKGDNGDRGD
RGQKGHRGFTGLQGLPGPPGPIGEQGSAGIPGPFGPRGPPGPVGPSGKDGNSGPLGPIGP
PGVRGTVGEAGPEGPPGDPGPPGPPGPPGHLTAAIGDIMGHYDDSMADPLPEFTEDEAAP
DDNNKTDPGVHATLKSLSSQIETMRSPGGSKKHPARTCDDLKLCHPSKKSGEYWIDPNQG
CVEDAVKVYCNMETGETCISANPSSIPRKTWWTSRSADLKPVWYGLDMNRGSQFVYGDSE
SPNTAIIQMTFLRLLSKEASQNITYHCKNSIGYMDDQSKNLKKAVILKGSNDLEIKAEGN
NRFRYTVLQDTCSKHNGNVGKTVFEYRTQNVARLPIIDIAPVDIGSTDQEFGIEIGPVCF
V
NT seq
4506 nt
NT seq
+upstream
nt +downstream
nt
atgatggcaagctggatgcaaacaagaacttttttaatccttgctgctttattagggcaa
tttgtaacaataaaagcacaagaagatgaagattatgggggtgaagaagatggtgaagaa
gtagcctgtactcagaatggtcagatgtatctgaacagggatatttggaagccctcacca
tgccagatttgtgtttgtgacaatggagccattctttgtgatgagatccagtgtcaagat
gtgctcgaatgcgagaaccctcaggtgccaccaggagaatgttgccctgtgtgttcccat
acatcacgtagttttgatactaatgttggtagaggaaggaagggagaaaaaggagaacct
ggaatagtgccaattgttacaggtatacgaggccgccctggaccatcggggcctccaggc
tcacaaggaccaagaggagaacgaggaccaaaaggaagacctggtgcccgtggtcctcca
gggatggatggggaacctggtatccctggacagcctggtgatcctggtcccccaggacat
ccaacccacccaggaccagatggagtaagtaggccgtttgcagctcagatggcaggtttg
gatgaaaaaactggacttggtagtcatatgggactcatgcctggtgcagtgggtccggtg
ggtccaagaggtcctcagggtctacaaggaaaacaaggtggtcctggcccaacaggtcca
ccaggtgaacctggagaacctggaccaatgggtccagttggttctcgtggcccagaagga
cctccaggcaaacctggtgaagacggtgagcctggtagaccaggacaaggtggtgaggtt
ggatttccaggatctccagggacacgaggctttcctggtgctccaggtcttccaggtctc
aagggccacaggggccacaaaggactagatggtcctaaaggtgagactggagcactggga
gccaagggtgaatccggtcctccgggtgccatgggtgcaactggacctctaggtcctaga
ggaatggcaggagaaagagggcgaattggaccacaaggggctccgggtggacgtggtaca
catggcatgcctggaaagcctggaccaatgggtcctcttggtctatctggttctcctggt
tttccaggcattcctggtatgaagggtgacgcaggtccaacaggtccacgtggtccagaa
ggcccacaggggcaacgaggtgaaacagggccacaaggtccacaaggatcatcaggtctt
cctgggactgaaggaacagatggttctcttggtgctaaaggcccaacaggatctccaggc
acctctggcccacctggcttatcaggtccacctggctctccaggacctcaaggcagtact
ggtcctccaggaatacgaggccaagccggagaccctggtgtgccaggtttcaaaggagaa
gcgggtcctaaaggtgaacctggtccacaaggttctcagggtcctattggaccattaggt
gaagaagggaaaagaggccctcgtggtgatccagggtcagtaggtccaccaggtcctgtt
ggagaaaggggtgctcctggtaaccgtggttttccaggttctgatggcttgcctggacca
aagggagctcagggggagcgtggtccagcaggttcttctggtcctaaaggaggccaggga
gatcctgggcgtccaggtgaacctggcctcccaggtgctaggggtctcacaggaaatcca
ggtgttcagggtcctgaaggaaaacttggtcctttgggtgcaccaggagaagatggacgt
ccaggcccagcaggatcaataggtattcggggtcagccaggcagcatgggtcttccagga
ccaaaaggcagcagtggtgatcctggaaaacctggagaagcaggcaatgctggtgtccca
gggcagagaggtgctcctggtaaagatggtgaagttggcccttctggtcctgttggtcca
cctggcttagcaggggaaagaggagaacaaggtcctccaggccccacaggctttcagggt
ttgccagggacaccaggtcctccaggggaaggaggaaagccaggagatcagggtgttcct
ggagatcctggagctgtaggcccattaggtccaagaggtgaacgtggcaatccaggggag
agaggagaaccaggtgcaccaggacttcaaggtgaaaagggtatggctggaggtcatggt
cctgatggtccaaagggcaatccaggccccactgggaccccaggtgatccaggccctcct
ggtcttcagggtatgcctggagaaagaggtattgctggaactccaggccccaagggtgac
cggggcggcatgggggagaaaggtgctgaaggtacagcaggaaatgatggtgcaaggggt
cttccaggtccattaggtccaatgggtcctgcaggtcccactggtgaaaagggtgaatct
ggtccacgaggtttagttggtcctcctggatcccgtggaaatccgggttcccgtggtgaa
aacggcccaactggtgctgtcggttttgctggtcctccgggccctgatggtcagccaggt
gtgaaaggggaacctggagaacctggacagaaaggggatgctggatcaccaggaccacaa
ggccttgctgggtctcctggcccaccaggtccttctggtgttcctggtctaaaaggtggt
cgtggcactcagggtccaccaggtgcaacaggatttcctggatctgctggaagagtcgga
cctccagggcctactggtgctccagggcctgccgggcctattggtgagccaggaaaggaa
ggccctccaggtcttcgtggtgatcctggttctcatggccgagtaggagatcgtggacca
gctgggccaccaggtggtcctggagacaaaggagatgcaggagaagatgggcaacctggt
cctgatggtcccccaggtccagctggaaccactggtcagagaggtattgttggtatgcca
ggtcagcgaggtgagagaggcatgcctggcctgcctggacctgctggcacaccaggaaaa
caaggtccaacaggcccaccaggagataaaggtcctccggggcctattggccaatcaggt
gccactggtccagtaggtgaacctggtccagaaggacctgctggtaatgatggtactcct
ggacgagatggagctgttggagaacgtggtgatcgtggtgagccaggaccttcaggttta
ccaggtgctcagggtgctccaggtacgccaggaccagttggaccacaaggagatgcaggg
cagaggggtgaagtaggttctcggggtccaatgggtccacctggccgtgctggaaaacgg
ggcttgcctggtccccaagggcctcgtggtgacaaaggtgataacggagaccgaggtgac
agaggccagaagggacacagaggtttcactggtcttcagggtcttcctggtccacctggt
ccaattggtgaacagggcagtgctgggattccaggtccttttggacctagaggccctcca
ggtccagttggtccttcaggcaaagatggaaactctggacccctcgggccaattggacct
cctggtgtaagaggaactgttggagaagcaggacctgagggtcctccaggtgatcctggg
cctccaggtcctccaggccctccaggtcatctcacagctgccattggtgacattatgggt
cattatgatgacagtatggcagatccactgccggagttcactgaagatgaagcagcccct
gatgacaacaataagacagatccaggagtccatgccacattgaagtcactgagtagccaa
attgaaactatgcgcagtcccggtggctccaagaaacacccagcacgcacatgcgatgat
ctaaaactctgtcacccatcaaagaaaagtggtgaatattggattgaccctaaccagggt
tgtgttgaagatgccgttaaagtatattgcaacatggaaactggggagacttgtatttct
gcaaacccatccagtataccacgcaaaacatggtggacaagtaggtcagctgacctcaaa
cctgtatggtatggtcttgacatgaacaggggttcacagtttgtctatggagatagtgaa
tcacccaatactgctatcatccaaatgaccttcctgcgtctcctatcaaaggaggcttct
cagaatatcacctaccattgtaagaacagcattgggtacatggatgaccagtctaagaac
ctcaaaaaagctgtaattcttaaggggtcaaatgacctggagatcaaagcagaaggaaac
aaccgatttagatatactgttcttcaggacacctgttctaaacataatgggaatgtgggc
aaaactgtctttgaatacagaacacagaatgtggcacgtttacctatcatagatattgcc
cctgtggatattggcagtactgaccaggaatttggaattgagattgggccagtttgcttt
gtgtaa
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