Gavialis gangeticus (Gharial): 109301910
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Entry
109301910 CDS
T07453
Symbol
COL18A1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
ggn
Gavialis gangeticus (Gharial)
Brite
KEGG Orthology (KO) [BR:
ggn00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ggn04147
]
109301910 (COL18A1)
00535 Proteoglycans [BR:
ggn00535
]
109301910 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
ggn00536
]
109301910 (COL18A1)
Exosome [BR:
ggn04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
109301910 (COL18A1)
Proteoglycans [BR:
ggn00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
109301910 (COL18A1)
Glycosaminoglycan binding proteins [BR:
ggn00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
109301910 (COL18A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF959
Laminin_G_3
DUF1554
LDL
Motif
Other DBs
NCBI-GeneID:
109301910
NCBI-ProteinID:
XP_019378773
LinkDB
All DBs
Position
Unknown
AA seq
1578 aa
AA seq
DB search
MAPAKPSLCLLLLLICCFSLSEAQLLSWLGWETPKQKAVTVPPEENSTTEEQTMGSLTSP
AASTLHAHLQTMAQQEGKIRNIFTLKRQEPESDVTVPTAAPSRTSKDKEENIAGVGAEIL
TVAEGIRSLVQLWDETVTKGTEGTQELTTAAPFTAAHPSLSATSLVTGSAGIENMTADST
GGVQSPLETGQPDVAFPVPTGPPPVLWNRTRVLLQQPASLPPENFSTEVGLLELIGDPPP
EQITKIYGPDNNPGYVFGPDANTGQVARYHLPSPFYRDFSLLFHIQPTTNKAGVLFAITD
SSQTVIYIGIKLSDAKEGRQQIIFYYTEPGSQSSYAAATFTVSSLLNQWTRFAISVEDEE
VVLFLDCEEYDRIRFERSPDEMELEDGSGLFVAQAGGADPDKYQGVIADLKIKNDPHAAV
LQCEEDEDDTEEMSGDFGSGAEEKLHSSGKERGIPTVSGLPKPPPVTSPPIAGRPVEKVS
GSSQLQTEHIKAEETPSVSTGDKVGQKGEKGEKGERGPKGDSRTGGVPSTGGGKGEKGEK
GELGVKGSAGFGYPGSKGQKGEPGAPGDPGPPGPPGPSGTILQHQDGSVVEHVTGPPGAV
GPPGLPGKDGPPGKDGEPGDPGEDGKPGDTGPQGFPGTPGEPGLKGEKGDPGVSVRGSPG
PPGPPGPPGIPGLSSKQDKLTFIDMEGSGFAGDLESLRGPQGPPGPPGPPGVPGLPGEPG
RFGMNHTAIPGPPGLPGKDGSPGLQGPPGPPGPPGRDGLLGQPGFRGEKGDSGDLGLPGA
PGPKGSKGETGPQGSPGETGLAGLPGPIGPRGQPGPPGPPGPPGPGYEAGFGDMEGSGMP
VVSGVPGPRGPEGPQGPPGLPGLKGDTGSSGQPGVPGQKGDPGTPGTNGQPGLEGFPGPQ
GPKGDQGSPGVKGERGQDGVGLPGPPGPPGPPGEIVYASNKTLAVLPGPEGRPGHAGFPG
PVGPKGEAGSPGLQGFPGLKGEKGEPGVIIGPDGTVTALDTKGEKGEPGLRGPVGPPGPH
GRPGQKGEIGFPGRPGRPGMNGLKGEKGDPADPSGGFGLPGLPGPPGPPGPPGSIVPIYD
GNAFTESGPPGPPGLPGYQGAPGQKGEKGDTGAPGPPGQFPYDLSRFGAAFRGEKGERGD
SGLKGEKGEPGGGTLYGPGVVGQPGPPGPQGYPGLPGPKGDSIAGPPGPPGPQGPPGIGY
EGRQGPPGPPGPPGPPSFPGPHRQTNVVGPPGPPGPPGPPGTSGTSASSGLKILPSYQAM
LSTAHEVPEGWLVFIVDREELYIRVRNGFRRILLEDRTVISSTALDNEVYDKPPSIHFAH
GSSPSSGSQPRVPVHPHRDYNTYTTVRPWGGDDIIANHHRLPKQPSIHQGAQHQQENLHD
FYPNRRPENTPSAMHTHHDFQPALHLVALNTPLSGSMRGIRGADFQCFQQAREVGLTGTF
RAFLSSRLQDLYSIVRRADRSSVPIVNLRDEVLFNNWESLFSGTEAQLRGGAHILSFNGK
DILRDSTWPQKSVWHGSDSKGRRLTENYCETWRTDSSVVTGQASSLSSGKLLEQKASSCQ
NAFVVLCIENSFMTSSKK
NT seq
4737 nt
NT seq
+upstream
nt +downstream
nt
atggctccagccaagcccagtctatgcctcctgctcttgctaatctgctgcttctccttg
tcagaagcacagcttctgagttggctgggttgggaaacaccaaagcagaaggcagtaact
gtcccccctgaagagaacagcactactgaggagcagacgatgggatcgcttacctctcca
gcggctagcacgctccatgctcatttgcagacaatggcacagcaagaagggaaaatacgg
aatatatttacactcaagaggcaagagcctgagtcggatgtgactgtgcccacagcggca
ccatctcgaacatcaaaagacaaggaggagaatattgcaggggtaggggctgagatactg
actgttgctgaaggcattaggagcttggtccagctgtgggatgagacggtcaccaaggga
acagagggcacgcaggaactgacaacagctgctcctttcacagctgcacatcccagcctc
tctgctactagccttgttacgggatcagctggcattgagaacatgactgctgactctaca
gggggtgtccaaagcccactggaaactgggcagccagatgttgcattccctgttcccacc
gggcctccccctgtcctatggaacaggactcgagtgctcttacagcagcctgcgtctctt
cccccagaaaatttcagcacagaagttggactcttagagctgattggagatcccccacca
gagcagataaccaaaatttatggccctgacaacaatcccggctatgtctttggccctgat
gccaacactggtcaagtggcccgataccacttgccaagccctttttatcgggacttttca
ctcctgttccatattcagcccacaactaacaaggccggcgtgctctttgccatcacggac
tcttcacagactgttatttacattggcattaagctctctgatgcaaaggaagggaggcag
cagatcatcttctactacacagaaccagggtctcagagctcatatgcagctgccactttc
accgtgtcatccctcctgaaccagtggactcgctttgctattagcgtggaggatgaggag
gtggtgctgttcctcgactgtgaggaatatgaccggattcgttttgaacgctcccctgac
gagatggaactggaggatggctctgggctcttcgtggcgcaggctggaggggctgatcca
gacaaataccagggggtgatagcagacttgaagataaaaaatgatccccatgctgctgta
cttcaatgtgaggaggatgaggacgatactgaggagatgtctggagattttggaagtgga
gctgaggaaaaactccactcatcaggaaaggagagggggatcccaactgtctcaggactc
cccaaacctccccctgtcacttctccccccattgctggcaggccggtggagaaagtcagt
gggagctctcagctgcagacagagcacatcaaagcagaagaaacaccatcagtatctaca
ggagacaaggttggtcaaaaaggtgaaaagggggagaaaggagaacgtggtccaaaagga
gactccagaactggtggggttccgtccacaggtggtggcaaaggagaaaagggagaaaaa
ggtgaacttggtgttaagggaagtgcaggatttgggtatccaggctcaaagggccagaaa
ggcgagccgggtgctccaggggatcccggtcctcctggccccccagggccctctggaacc
atcttgcagcaccaggatggctctgtggtggagcatgtcactgggcctccaggagccgtg
ggccccccagggcttcccgggaaagatggtccccctggcaaggacggagagcctggggat
cctggtgaagacggcaagcctggtgacactgggccccagggattcccaggaactccaggg
gagcctggcctcaagggtgagaagggtgacccaggggtcagtgtgagaggatcccctgga
ccgcctggcccacctggcccacctgggataccaggactttcatctaaacaggataagctg
acattcattgacatggaagggtctgggtttgcaggtgatctggaaagtttgcggggaccc
caaggcccaccaggtcccccaggacctcctggtgtgcctggcctgccaggagaaccggga
agatttgggatgaaccacacagcgattccaggtccccctggcctgccaggcaaagatgga
agccccggactgcaaggaccacctggtcctccaggtcctccaggaagagacgggttactt
ggccagccaggattcagaggagagaagggtgattccggtgatttaggccttcctggagct
cctggacccaagggcagtaaaggagaaactggaccacaaggatcgccaggggaaacaggg
ttggctggccttcctggacctattggaccccgaggacagccaggtcctcctggtcctcct
ggacctccagggccaggctatgaagctggatttggtgatatggaaggctcaggcatgcca
gttgtttccggtgttcctgggccacgtggacctgaagggccacaggggccaccgggactc
cctggactcaagggagacactggcagttcaggtcagcctggtgtgccaggacaaaaggga
gatcctggtactccagggacaaatggtcagcctggattggagggcttcccaggacctcag
ggaccaaagggtgaccaaggcagcccaggggttaaaggtgaacgaggtcaagatggagtt
ggactgccaggtccccctgggcccccaggaccaccaggagagattgtctatgcctccaat
aaaacattggctgttttgccaggcccagagggcagaccaggtcatgctggcttcccgggc
ccagtgggacctaaaggagaggcaggatccccagggctccaaggctttccagggctgaag
ggtgaaaaaggagagcctggagtgatcattggcccagatgggacagtcacagcccttgac
acaaaaggagaaaagggtgaaccggggctgaggggaccagtgggcccaccgggcccacat
ggacggcctggacagaagggagagattggctttcctggtagacctggtcgtcctggcatg
aatgggctgaagggtgagaagggtgaccctgcagaccctagcggagggtttggcttaccg
ggtcttccaggtcccccaggccctccaggccctcctggcagcatagtgcccatctatgac
ggtaacgcatttactgagtcaggccctcctggacctcctggcttgccaggttaccagggt
gccccaggacagaagggtgagaaaggagacacaggtgccccagggcccccaggccagttc
ccttatgacctcagccgatttggtgccgcttttcggggtgaaaaaggagagcgaggggac
tccggcttaaaaggcgaaaaaggcgagcctggtgggggaacactatatggaccaggcgtt
gttggacagccgggccctcctggtccccagggctaccctggtcttccgggtcccaaggga
gacagcattgctggcccacctggccccccaggacctcagggacctcctggcattgggtat
gaggggcgacagggccctcctggcccacctgggccccctgggcccccctccttcccagga
ccccacagacaaaccaatgtggttggccctcctggcccaccagggcctccaggacctcca
ggcaccagtgggacatctgcttcctctgggctgaagatcctgccatcatatcaggccatg
ctgagcacagcccatgaggtgcccgaggggtggcttgtcttcatagtggacagagaagag
ctgtacatccgtgtgcgaaacggcttccggagaatcctgcttgaagatcgcactgtgatc
tccagcactgcactggacaacgaggtgtatgacaagccacccagcatccattttgcacat
ggcagctctccctcttctgggtcacagccgcgtgtacctgtgcacccgcaccgcgattac
aacacttacaccacggtgcggccctggggaggagatgacatcattgctaaccaccaccgc
ctacccaagcagccctccatacaccagggagcacagcaccagcaggagaatctgcatgac
ttctatccaaaccgccggccagagaacaccccctctgccatgcacacgcaccatgacttc
cagcctgctctccacctcgtggctctgaacacccccctgagtggcagcatgcgcggcatc
cgtggagctgacttccagtgcttccagcaggccagggaggtcggactgacaggcaccttc
cgagccttcctctcctcccggctgcaggacctgtacagcatcgtgcgcagggctgaccgg
agctcggtgcccattgtcaacctcagggatgaagtgctgttcaataactgggagtccctg
ttttcaggcacggaggcgcagctccgaggtggtgctcacatcctctcctttaatggaaag
gatatcctgagagactccacttggcctcagaagagcgtgtggcatggctctgactccaag
gggcgtcgcctgaccgagaactattgtgagacgtggaggactgacagcagcgtggtgaca
gggcaggcctcctctctgagctcaggcaagcttctggagcagaaggcaagcagctgccag
aatgcctttgtcgtcctgtgcattgagaacagcttcatgacctcttccaaaaaataa
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integrated database retrieval system
