Gavialis gangeticus (Gharial): 109302536
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Entry
109302536 CDS
T07453
Symbol
COL4A2
Name
(RefSeq) collagen alpha-2(IV) chain
KO
K06237
collagen type IV alpha
Organism
ggn
Gavialis gangeticus (Gharial)
Pathway
ggn04382
Cornified envelope formation
ggn04510
Focal adhesion
ggn04512
ECM-receptor interaction
ggn04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ggn00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
109302536 (COL4A2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
109302536 (COL4A2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
109302536 (COL4A2)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
109302536 (COL4A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ggn04147
]
109302536 (COL4A2)
00536 Glycosaminoglycan binding proteins [BR:
ggn00536
]
109302536 (COL4A2)
Exosome [BR:
ggn04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
109302536 (COL4A2)
Glycosaminoglycan binding proteins [BR:
ggn00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
109302536 (COL4A2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
109302536
NCBI-ProteinID:
XP_019379655
LinkDB
All DBs
Position
Unknown
AA seq
1706 aa
AA seq
DB search
MTMQVLLLLMLTTLLTGRVQAGGKTYTGPCAGRDCSGGCQCFPEKGSRGQPGPLGPQGFP
GPPGLIGIPGLEGPKGHKGERGQPGITGPKGDQGLRGVTGFPGADGVPGHPGQPGSRGKP
GHDGCNGTTGDPGEQGIQGPPGQFGFTGAQGPKGQKGEPYVLPSEVAEQYRGEMGEPGIK
GFPGPQGEPGPVGFIGPKGRPGRPGRPGPPGPPGEKGNRGLGFYGEKGEKGEIGPKGSPG
RPSTREFTTSTDFSMDDYKGEKGMQGKRGDPGSSGSPAFSAEKGEEGRMGFPGQRGLPGI
KGIQGPVGEAGPTGFYGSPGYDGPKGTKGEQGERGIQGLPTYVPYPIPRKGVRGDPGVPG
FHGPRGELGEKGDPGIPGWPETLDGLDDLDKRGLPGEMGPKGYKGEPGFSAFQPGIPGFP
GQPGPKGFPGPPGPKGSSFISFGLKGRTGDPGEAGSQGFPGPRGDKGFKGETGDCKCTRS
DEARKGSAGLPGPPGFEGPPGEPGRKGEPGDQGQHGIPGFPGTEGFPGETGYPGPRGQKG
DSIYITTKGIKGDPGDPGLAGVQGDDGLPGKDGTHGLPGPTGLPGDGIRGLPGDPGFPGP
TGVKGFQGDAGLPGVGLPGSKGFHGLPGDHGTYGKSGPPGPPGPPGDPAQLGCDQVPEDL
SRGDGREPIWPGAGCVRAPTGQPGKPGFPGSTGSKGAKGIPGDPGLDGFQGLKGFPGDPG
QEGLPGPPGFPGPRGERGPSGLPGQQGEKGISGKPGVQGPEGPKGVAGEVLGASAGSIGD
VGLPGLPGLKGPPGNQGVPGLQGAGGIPGSPGSKGEPGLQGPRGLIGLPGEPGSHGFPGI
PGQQGPAGRGGITGHIGSPGARGDHGEQGFPGPVGMKGLSGDKGEPGIPGIQGIPGKTGL
PGIDGMHGLQGYKGAKGSPGIEGFKGMTGNRGFQGHKGFKGETGFFGIYGPKGEQGIPGS
KGDRGEQGEPGEPPKIEAKMLKEVKGEKGDSGQTGIAGDPGFKGLKGMPGIPGKPGFPGF
PGQPSHVSGAKGDIGSKGVSGSPGYPGQAGSPGIRGFPGSTGIRGEKGTPGFTGLFGESG
LPGESGDPGDTINLPGSPGLRGEVGTPGSSGVRGSPGEKGQRGDPGFSGIEGLKGLQGLP
GIKGQSGFPGLVGPPGQQGDPGAPGLPGEKGTRGWPGLAGPTGLPGLRGISGPSGLPGTK
GLPGSPGLDDYGPSGFPGGPGDKGQIGDPSTFEGARGGPGQKGERGNQGERGPAGSPGHD
GIPGPPGVSNISGIRGDVGSPGLHGVPGYKGEQGRHGIPSPPGSKGETGQIGVIGEDGPK
GTRGDPGLTGKPGILGSFGEKGQKGEEGVMGPVGTVGIPGDRGPTGPKGNRGVTGLQGPP
GSPGLSPIPSKRLAEVGAPGPRGQRGPQGIPGEIGPQGPLGDLGFRGAPGKQGFQGRSGI
PALPGFRGDQGPQGHQGPSGSEGIPGRPGSPGLPGMPGRSISIGYLLVKHSQSDQEPMCP
IGMNKLWSGYSLLYFEGQEKAHNQDLGLAGSCLTRFSTMPFLYCNPGDVCYYASRNDKSY
WLSTTAPLPMMPVAEEEIRPYISRCSVCEAPAVAIAVHSQDVSIPHCPEGWRSLWIGYSF
LMHTAAGDEGGGQSLVSPGSCLEDFRATPFIECNGARGTCHYYANKYSFWLTTIEEQFQS
TPSADTLKAGLIRTHISRCQVCMKNL
NT seq
5121 nt
NT seq
+upstream
nt +downstream
nt
atgacgatgcaggttctgctgctgttgatgctgactacactgttaactggaagagtccaa
gctggcggaaagacttacacaggaccatgtgcaggaagagactgtagtggaggatgtcag
tgtttccctgaaaaaggaagccgtggccaaccaggaccacttggaccacagggattccct
ggaccaccaggattaataggtataccaggtttagaaggtcccaaaggtcataaaggtgaa
agagggcaaccaggaataactggaccaaaaggagaccagggcttaagaggagttactggc
tttcctggggcagatggtgttcctggtcatccaggccagccagggtcaagaggaaaacca
ggtcatgatggctgcaatggtacaacaggtgaccctggtgaacagggaatccagggcccc
ccaggtcaatttggtttcactggagcccaaggaccaaaagggcagaagggagaaccatat
gtattgccttctgaagtagcagaacaatacagaggggagatgggtgaaccaggaattaag
ggctttccaggacctcagggtgagcctggtcctgtgggctttattggtccaaaagggagg
ccaggaagaccaggacgaccggggccgccaggacctccaggagaaaaaggcaacagaggc
cttggcttttatggagaaaaaggtgaaaagggcgagataggtcccaaaggttctcctggg
cgtccatctacaagggagtttacaacttccacagatttctcaatggatgactacaagggt
gaaaaaggaatgcaaggaaaaagaggagatcctggaagttcaggctcccctgcattttca
gctgaaaagggagaagaagggagaatgggttttccaggacaaaggggattgccaggcatc
aagggcattcaaggacctgttggagaagcaggtcctacaggattttatggctccccaggc
tatgatggtcctaaaggaacgaagggagagcagggagaaaggggtatccaaggattgcct
acttacgttccttatcccattccaagaaaaggtgtcagaggtgacccaggagtaccaggt
ttccatgggcctagaggagagttgggggaaaaaggagatcctggaattcctggttggcct
gaaacattggatgggcttgatgacttggacaaaagaggtttacctggagaaatgggaccc
aaaggttataagggagaaccaggtttttcagcttttcagccagggatacctggctttcct
ggtcagcctggaccaaaaggattccctggccccccaggcccaaaaggcagttcattcatc
tcatttggactgaagggacgcaccggggatccaggtgaagcaggcagccaaggtttccct
ggaccacgaggagataaaggatttaaaggtgaaacaggggattgtaagtgtaccagaagt
gatgaagccagaaagggttctgctggtctacctggtccaccaggttttgaaggcccacct
ggagagcctggaaggaaaggagagcctggcgatcaaggtcaacatggcattccaggcttc
cctgggacagaaggcttccctggtgaaactggataccctggaccaagagggcagaaagga
gattctatttatataacgactaaaggtattaaaggagatccaggagatcctgggctggct
ggtgttcaaggtgacgatggtttaccaggaaaagatggcacacatggtttaccaggaccc
actggccttccaggtgatggtatcagaggtctcccaggtgaccctggttttccaggcccg
acaggtgttaagggcttccaaggagatgctggactgccaggtgttggtttacctggctca
aaaggatttcatggtcttccaggggaccatggaacatatggaaagtctggacctccaggt
cctccaggtcctccaggagatccagctcagctaggttgtgaccaagttcctgaagatctt
tctagaggagatggaagggagccaatttggccaggtgcaggctgtgtgagagcaccaaca
ggacaaccaggaaagccaggattcccaggatctacaggttcaaaaggtgcaaaagggatt
ccaggtgatccaggtctagatggatttcaaggcctgaaaggttttccgggtgaccctggt
caagaaggattaccaggtcctccaggatttcctggacccaggggagaaagaggcccatca
ggtttacctggtcaacagggggaaaagggtatttcaggaaaaccaggagtccaagggcct
gaaggaccaaagggagttgcaggtgaagttttaggagcatcagcaggctccattggtgat
gtcggactacctggattacctggattaaaaggtccaccaggaaatcaaggagtaccagga
ctgcaaggagctggtggtatcccaggttcaccaggatccaaaggtgagccaggtctccaa
ggccctcgtggcttgattggtctgccaggagaaccaggatcacatggattcccagggatt
ccaggacagcaaggaccagctgggagaggtggtataactggacacattgggtcacctggt
gccaggggagatcacggtgaacaaggttttcctggcccagtgggtatgaaaggtctatct
ggtgataaaggtgaaccaggtatcccaggaatacaaggtatacctggtaagactggtctc
cctggcatagatggaatgcatggccttcaaggatataaaggtgctaagggttcccctggc
attgaaggtttcaaaggcatgacaggcaaccgaggatttcaaggacataaaggattcaaa
ggagaaacaggcttttttggcatttatggtccaaaaggtgaacagggtataccaggctcc
aaaggtgaccgtggggaacaaggagaaccaggagagccaccaaaaatagaggccaaaatg
cttaaggaagttaaaggtgaaaaaggagatagtggacaaactggcatagcaggggatcct
ggctttaaaggtcttaaaggaatgccaggtatacctggtaaaccaggattcccaggtttt
cctggacagcctagtcatgtttctggtgcaaagggagacattggtagtaaaggagtatca
ggtagtccagggtatccaggacaagctggctctcctggtatcagaggcttccctggaagc
acaggaatcagaggtgaaaagggtactccaggatttacaggcctttttggtgaatctggc
ttacccggtgaatctggtgacccaggagatactataaacttaccaggaagcccaggtctt
agaggagaggttggtacacctggatcctcaggtgtgagaggaagcccaggagaaaaaggt
caaagaggtgatcctggtttttctgggattgagggcttgaaaggattacaaggtcttcct
ggtataaaaggacaaagcggtttcccaggacttgttgggccaccaggacaacaaggagac
ccaggtgctcctggacttccaggtgaaaaaggaactaggggatggcctggtttagcagga
ccaacaggtttacctggcttacgaggaatcagtggaccgagtggtttgcctggcacaaaa
ggcctgcctggatcaccaggtctggatgattatgggccttcaggcttcccaggtggccct
ggtgacaaaggacaaataggagacccaagcacttttgaaggtgccagaggaggtcctggt
cagaaaggggagagaggcaatcaaggggagcgagggccagctggttccccagggcatgat
ggaattccaggccctcctggagtgtcaaacatatcaggaatccggggtgatgttggttct
ccaggcctacatggtgtgccaggctataaaggagaacagggcaggcacggaataccatct
ccaccaggaagcaaaggagaaactgggcaaataggcgtgattggagaagatggcccaaaa
ggcactaggggtgaccctggtctaacaggaaaaccagggattctagggagctttggagaa
aaaggccagaaaggggaagaaggtgtcatgggccctgttggcacagtgggaattcctggt
gacagaggccccactggacccaaggggaatagaggagttactggccttcagggacctcca
ggctctcctgggctgtctcccataccctctaagaggcttgctgaggttggtgcaccaggc
ccacgtgggcagagagggccccaaggaattccaggagagattgggccccagggtccatta
ggtgatttaggttttagaggtgcacctggtaaacaagggttccagggaagaagtggcatt
ccagcacttccaggttttagaggtgatcaaggaccacaagggcatcaaggtccatcagga
tctgagggtataccaggccgtccaggtagccctgggttgccaggtatgccaggtcgtagc
attagcattgggtaccttctggtgaagcatagccagtctgatcaagagccaatgtgcccc
attggcatgaacaaactctggagcggatacagtttgctatattttgaaggccaagaaaaa
gcacataaccaggaccttgggctggctggctcatgtttgactcggtttagtactatgcca
ttcctctactgtaaccctggggatgtctgttactacgcaagccggaatgataagtcctac
tggctctcaaccacagcacctctgcccatgatgcctgtggcagaagaagaaattagaccg
tatatcagtcgttgctcggtctgtgaggccccagctgtcgcgattgctgtccacagccaa
gatgtgtcaatcccacactgccctgaaggatggcgtagtttatggattggatattccttc
ctgatgcacactgcagctggtgatgaaggtggagggcagtcactggtttctcctgggagc
tgtttggaagatttcagagctaccccttttattgaatgcaatggtgcccgtggaacctgc
cactactatgcaaacaaatacagcttctggctcactactattgaagagcaattccagagc
acaccctctgcagacacgcttaaggcaggactcatccgaactcacatcagcagatgtcaa
gtttgcatgaaaaatctgtaa
DBGET
integrated database retrieval system
