Gavialis gangeticus (Gharial): 109302700
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Entry
109302700 CDS
T07453
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
ggn
Gavialis gangeticus (Gharial)
Pathway
ggn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ggn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109302700 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ggn03021
]
109302700 (PCF11)
03019 Messenger RNA biogenesis [BR:
ggn03019
]
109302700 (PCF11)
Transcription machinery [BR:
ggn03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
109302700 (PCF11)
Messenger RNA biogenesis [BR:
ggn03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
109302700 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
CID
Motif
Other DBs
NCBI-GeneID:
109302700
NCBI-ProteinID:
XP_019379963
LinkDB
All DBs
Position
Unknown
AA seq
1671 aa
AA seq
DB search
MYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRSTWDDIFPLKKLYA
LDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEEPSTPTSGVTSSGVSTPPAVPE
IQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQTKAQLAVSLSVQQGTSTMSPVPAP
SKQHVCQTPQMSVKASPVQSERSRPSPIPQVHDIKLVNRDPRLNRMAQHSSHAKEQSHRK
EFLSTTTNQSDIKVNKTVQPEKQNTSKQEKLKSNEKIQKKELDQAETKSKSPSPLKNKLS
HTKDTKTPTCENMKLSDISKRDPRLKKHLQEKPDVKDDDTKEKRKSIEKKEKEEHKTSEH
RPVGSRNKVINGVVQKQDANTEDSEKQGGKPGRSSNRKRSRSRSPKSRSPSAHSPKRRDR
RSPKRRLRSLSPTSSTPKIGKVRQSGLKQSHAEEFTQTTRDERNSNKRNVKQDVRDPRRL
KKTQDERPQETVNQHSAKSTPEPKENVENWQGPKSSKRWKSGWEESKNLQQSEEHQGLGK
SPHQRHRENWAAGKGILSPRAPKLQHRLSVDANLQIPKELTSASKRELLKKANERLASGE
ITQDEFLVVAHQIRQLFQYQEGKHRCNVWDSPTDEKCGVKKKPLLSDAELTYYEHKAKLK
RTQVQHAFPRLDLLDPDDILDYHLTDALLSGLECEQAKKRAQFDRKEQFGERSRRHSPIS
GNRPFTDNLSPHESERRHDEQNSSKGTSSSKSFDPYDSWGESDEFRDVFGQQGKSTPEFQ
KIDGEGFCKFDNPEDRQMLGQSGVREEPRSPFSERFKRSRYEDPEKTAFTDSPGSRFGGI
EVKQRITALMEDRPLFDGPSRPPVSRGGGDGQASHFVDGPSNNSNSRIDGPPAQASLRFE
GPLGQVGAGGAPQFDGPLAQAGGGGGMRFDGPPGQIGSGLRFEGPSGQVGGGGAIRFEGP
LGQVGNALRFEGPTGPSVGSLRFEGPTGQPVGSLRFEGPRGQPSGGLRFEGPHGQPMGPR
VHPGGGLRFEGPHGQPMGPHSQPGGGLRFEGPHLQQLGPHGQPAGGMRFEGPHSQPLGPH
GQPGGGLRFEGPHGQPVGPHVQAGGSGLRFEGPHIQPGVGPRFDGPSVQTGSGLRFEGPL
GQTGPRFDGCHSSRFDGQPGQLSLLQRFEGLHGQPGPRFERAPGQQTPPRFEGLPGQQAR
FDTAIPQRFDGPQHQASRFDMPLGLQGPRFENVANHPASRLETSPYGQTGPYSEHPNQTY
NGPSHGMQFQRPEMFDGSQGPNFNGPVGPTAQNYPSLLNRASGHYFDDKNLQGPQYGNFS
NMPNSMSVGNAQQPHQVPVLSVPSGQPVPYGQGQQYLPVRGQNPGGFLQNQADNHLGQLD
VNELFSKLVSTGILKLSKTDSTSAQANETAPQPAPEEEEDDQDQSEDQDVPDLTNFTIEE
LKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQNRTEKDVSRKVTHRRWY
YSLTDWIEFEEIADLEERAKSQFFEKAHEEVVLKTQEAAKEKEFQSVPAGPAGADESCEI
CQEQFEQYWDEEEEEWHLKNAIRVDEKIYHPSCYEDYQNTSSFDCTPSPSKTPVENPLNI
MLNIVKQETEEPACNSPTVTEPPVDTPAACTEESTPASIDIKTEPEEVESV
NT seq
5016 nt
NT seq
+upstream
nt +downstream
nt
atgtaccttatggattccattgtcaagaatgttggaagagagtatcttactgcgtttact
aaaaacctagttgcaacatttatttgtgtatttgaaaaggtggatgaaaatactaggaaa
agtttatttaaattacgctctacatgggatgatattttccctttgaagaagctatatgcc
ctcgatgtcagagtcaactcattagatcctgcttggcctattaaacctctacccccaaat
gtgaatacttctagcatccatgtgaatcctaagtttttaaataaatcgcctgaggaacct
tctacacctacctctggagtcacttcgtctggtgtctcaactcctccagctgttcctgaa
atacagaagaatttgacacaagagcaactaataagacagcaactgcttgcaaagcaaaaa
cagttgttagaacttcagcagaaaaaattagagctggagctagaacagactaaagcacaa
ttggcggtttctcttagtgttcagcaaggaacatctaccatgagtccagttccagcacct
tccaagcaacatgtgtgtcaaactcctcagatgtcagttaaagcttcccctgtgcaatct
gaaaggagcagaccttctccaatccctcaagttcatgatattaaattagtgaacagagat
cctcgacttaataggatggctcagcattcctctcacgctaaagagcaaagtcatcggaag
gaatttctgtcaaccacaacaaatcagtctgatatcaaggtcaataaaactgtgcaacct
gaaaaacaaaacacatcaaagcaagaaaagttaaaatcaaatgaaaaaatacagaagaaa
gaacttgatcaggcagaaacaaaatctaaatcaccatcccctttgaaaaataaattatcc
cacactaaagatactaaaactccaacatgcgaaaacatgaaattgtctgatattagtaag
agagatccaagactaaaaaagcatcttcaggagaagccagatgttaaagatgatgacaca
aaagaaaagaggaaaagtatagagaaaaaagaaaaagaggaacataagacatctgaacac
agacctgttggtagtagaaataaagtaattaatggtgttgtacagaaacaagatgccaac
acagaagattcagaaaaacagggtggaaaacctggacgatccagtaataggaaaaggtca
cgatcgcgctctcctaagtctcgttcaccatctgcacattctccaaagaggagagatagg
cgatcgcccaaaagaagactgaggagtctgtcccctacctcctcaactccaaaaattgga
aaggttcgtcagtcaggtcttaaacagtctcatgctgaggaatttactcaaaccacaaga
gacgaaagaaactctaataagagaaacgttaaacaagatgtgagagatccgaggagattg
aaaaaaactcaagatgagagaccacaggaaactgtaaatcaacattctgcaaaatccacc
ccagaaccaaaggagaatgtggagaattggcaaggtcccaaatcaagcaaaaggtggaaa
tctggttgggaggaaagtaaaaacttacaacagagtgaagaacatcaaggacttggtaaa
tcaccacatcaaaggcatagggaaaattgggcagctggtaaaggaattttgtcacctcgc
gcaccaaaactgcagcatcgattgagtgtggatgccaatttgcagattcccaaagaattg
acttctgcaagcaagagagaattactcaaaaaagcaaatgaacgtctggcatctggtgaa
ataacacaagatgagttcctggttgtggctcatcagattcgtcagttgttccaatatcag
gaaggaaagcacagatgcaatgtgtgggatagtcctacagatgaaaaatgtggcgtgaaa
aagaagccccttctttcagatgctgaattaacatactacgagcataaagctaaattgaaa
agaacacaagttcaacatgcatttccaaggcttgatttgttggatcctgatgatatttta
gactaccatttgacagacgcattgctttctggactggaatgcgagcaagcaaaaaaacga
gcacagtttgaccgaaaagagcagtttggagaaaggtcaagacggcattctccgatatct
ggtaatagacctttcactgataatctttcaccacatgaaagtgagcgaagacatgatgag
cagaattcctctaaaggaacaagcagttctaaaagctttgatccttatgatagctgggga
gaatcagatgaatttagagatgtgtttgggcaacaagggaaaagtacaccagaattccag
aaaattgatggagagggattttgcaaatttgataatcctgaagacaggcaaatgcttgga
cagagtggtgttcgagaagaaccaagatctcctttcagtgaacgtttcaagagatctaga
tatgaagatccagagaaaacagcatttaccgacagtcctgggtcaagatttggaggcatt
gaagtaaagcagagaataactgcattgatggaggacagacctctgtttgatgggccatct
agaccgcctgtttcaaggggagggggagatggacaagcaagtcattttgttgatgggcca
tctaataactcaaattctagaattgatgggccacctgcacaggcctctttgaggtttgaa
gggccactaggacaggttggtgctgggggtgcccctcagtttgatggaccattagcacag
gcaggaggagggggtggcatgcggtttgatggaccaccaggacagataggcagtggcctt
aggtttgaggggccctcagggcaggtaggtggagggggtgcaatcaggtttgagggccct
cttgggcaggtagggaatgctttgaggtttgagggacctacgggcccatctgtgggtagt
ctcaggtttgagggccctacaggccagcctgtgggtagtctcaggtttgaggggcctcgt
ggtcagccatcaggtggtctcagatttgagggacctcatggtcaacctatgggccctcgt
gttcatccagggggtggtctcagatttgagggaccccatggtcaacctatgggacctcat
agccaaccagggggtggcctcaggtttgagggaccacatttacaacaattggggccccat
ggtcaaccagcaggtggtatgcgatttgaaggaccacatagtcagcctttgggaccacat
ggtcaaccggggggtggtctcaggtttgaggggcctcatggtcagcctgtggggccacat
gttcaggcaggtgggagtggtctcaggtttgaagggccacatatccagccaggagttggt
cccagatttgatggaccttcagttcagactgggagtggacttaggtttgaaggtcctcta
ggtcaaactggtccaaggtttgatggctgccattcatccagatttgatggtcaacctggc
cagctgtctctcttgcaaagatttgaaggattacatggacaacctggcccacgatttgaa
agggcaccaggtcagcaaacacctcctcggtttgagggactgcctggtcaacaggcacga
tttgatacagcaatacctcaaagatttgatggccctcaacaccaggcttcgaggtttgac
atgcctcttggtctccaaggtccaaggtttgaaaatgtagcaaatcatcctgcctccaga
ctagaaacatcaccttatgggcaaactggtccatacagtgaacatcccaatcagacctac
aatggaccatcccatggtatgcaattccagagacctgaaatgtttgatggctctcaagga
ccaaattttaatgggccagttggccctacagcacagaactaccccagtctgctcaacaga
gcatctggacattactttgatgacaagaatcttcagggtcctcaatatggaaacttcagt
aatatgcccaattcaatgtcagtaggaaatgctcagcaaccacatcaggttcctgttctg
tccgtaccttctggtcaacctgtaccatatggtcaaggtcaacagtatttaccagtacgt
ggacaaaatcctggaggttttcttcagaatcaagcagataatcaccttggtcagcttgat
gtaaatgagttattctctaaactggtttctacaggaatcctcaaattgtcaaaaactgat
tccacttcagcacaagcaaatgaaactgctccgcagccagctcctgaggaggaggaggat
gaccaagaccagagtgaagatcaagatgtcccagaccttactaacttcacaattgaagaa
ttgaaacagcgttatgatagcgtcataaatcgactgtacactggcattcagtgttattct
tgtggaatgaggttcaccacttcacaaacagatgtttatgcagatcatttagactggcat
tatcgacaaaatcgcaccgaaaaagacgttagtagaaaggttactcacagaaggtggtac
tacagtttaacagattggatagaatttgaagaaatagctgatttggaggagcgcgcaaag
agccagttttttgaaaaagcacatgaagaagttgtgttgaaaacacaagaagctgctaaa
gagaaagagtttcagagtgtacctgctggaccagctggagcagatgagagctgtgaaatt
tgtcaagagcaatttgaacaatattgggatgaggaagaagaagaatggcatctaaagaat
gccattagagtagatgaaaagatttaccatccatcatgttatgaagattaccagaataca
tcgtcatttgattgcacgccatctcccagcaagaccccagtagaaaatccattaaatatt
atgttgaacattgtcaaacaagaaacagaagagccagcctgtaacagccctacagttaca
gaaccaccagtggacacacctgctgcctgtacggaagagagcacacctgcatctatagat
attaaaacagagcctgaagaggttgaatcagtttaa
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integrated database retrieval system
