Gavialis gangeticus (Gharial): 109303815
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Entry
109303815 CDS
T07453
Symbol
RFC1
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
ggn
Gavialis gangeticus (Gharial)
Pathway
ggn03030
DNA replication
ggn03410
Base excision repair
ggn03420
Nucleotide excision repair
ggn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ggn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
109303815 (RFC1)
03410 Base excision repair
109303815 (RFC1)
03420 Nucleotide excision repair
109303815 (RFC1)
03430 Mismatch repair
109303815 (RFC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ggn03032
]
109303815 (RFC1)
03400 DNA repair and recombination proteins [BR:
ggn03400
]
109303815 (RFC1)
DNA replication proteins [BR:
ggn03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
109303815 (RFC1)
DNA repair and recombination proteins [BR:
ggn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
109303815 (RFC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
AAA_14
AAA_5
BRCT_2
AAA_30
Rad17
RuvB_N
AAA_7
AAA_16
AAA_33
AAA_18
AAA_17
nSTAND3
RNA_helicase
AAA_19
NTPase_1
TCAD2
Motif
Other DBs
NCBI-GeneID:
109303815
NCBI-ProteinID:
XP_019381645
LinkDB
All DBs
Position
Unknown
AA seq
1143 aa
AA seq
DB search
MDIRKFFGVVSTGKKNECEAAKRTEKTKNGEGTSAGKKKRKETKVKNSSNEDDTPKKQTK
KKKRIIYDSDSEEETQSVKKSKKLPERKQSSSKPDTVLKQDPVVYISETDEEDDFVKKTC
LKLKENGASAHSCQGTAGVRKEDAKPQAKSKPLSSVKLTPTSALDYFGTGSVQRSEKILV
SSKRKEPSQSRDSTLEDEAIAKILQLEEDAELERQLHEDEEFARTLAMLDETPKERKAHN
DPEEKPTTLVTKKSPNTADKHKQSQKANSIDDGVNYNKKEQTKYESMRESCSRPGPSVDK
TMNKTLPLKPSSKLVALKQKEESKKKERESLSVAARERKTSEKEEKATPKKERVSPQKPE
SVSPEDSEKKRVNYQAYRSFLNREGPKALGSKEIPQGGENCLEGLTFVITGVLESIERDE
AKSLIERYGGKVTGSVSKKTNYLVMGRDCGQSKCDKASALGTKIIDEDGLFDLIQTMPGK
KSKYELAAEAEVNKAKSQGEKTPQKAGAAKRKNSSTKKETDSKKKKSTPGKGGNLKAFKK
ETAEARKVLDFTQQVAERKHATKAEETSVSEISTGGTEGLLWVDKYKPMSIKTIIGQQGE
QSCANKLLRWLRNWHKNTSEDKYAKPSKFGGRDDGTNFKAALLSGPPGVGKTTTAALVCE
ELGYSYVELNASDTRSKNSLKEVVAESLNNTSIKDFCSGTSPSVSTKHVLIMDEVDGMAG
NEDRGGIQELIGLIRLTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIKGAMMSV
AYKEGLKIPPPAMNEIIMAANQDIRQVLHNLSMWCAKDKSLTYDKAKADSSKAKKDIKLG
PFDVVRKVFATGEETAHMSLIDKSDLFFHDYSLAPLFVQENYVHVKPVAAGNNLKKHLML
LSRAADSICDGDLVDTQIRRKQNWSLLPTQAIYASVLPGELMRGYMSQFPNFPSWLGKFS
STGKHERIIQELAMHMSLRTNTCKRTVNMEYLSYLRDAIVRPLTSLGVEGVPNAVTFMDS
YCLMKDDVENIMEISSWGGKPSPFSKLDPKVKAAFTRTYNKEAHLTPYALHVVKTSKRRA
GSTLTSELNEELNADELQSEEEQDSIENDAMIKQKKAKSSKVSKAEKSEEPKMEGKRKAK
MRR
NT seq
3432 nt
NT seq
+upstream
nt +downstream
nt
atggacatccgaaaattctttggggttgtatctactgggaagaaaaatgaatgcgaggca
gcaaaaaggactgagaaaaccaaaaatggggaaggaacttcagcgggaaagaaaaagaga
aaggaaaccaaagtgaagaactcatctaatgaagatgataccccaaaaaaacagacaaag
aagaaaaaaaggatcatctatgattcagattcagaagaggagactcagtcagtgaaaaag
tccaagaagctgcctgagagaaaacaatcatcttcaaaacctgatacagttctaaagcag
gatcctgttgtttatatctcagagacagatgaagaagatgactttgttaagaaaacttgc
ttgaaactcaaggaaaatggggcgtcagcacacagctgccaaggaacagcaggagtgaga
aaggaagatgcaaaaccacaagctaaaagtaaacctttatcttcagtaaaactgacacca
acttcagcacttgattattttggaactggaagtgtccaacgatcagagaagatactggta
tcaagcaaaagaaaagagccttctcaaagcagagattccacattggaagatgaggccatt
gctaagatactgcagcttgaggaggatgcagagctggagagacagctgcatgaagatgaa
gaatttgctaggactttggctatgctggatgaaacaccaaaggagagaaaagctcataac
gatccagaagaaaagccaacaactttggttaccaaaaagagtccaaacacagcagacaaa
cataagcagtctcaaaaagcaaactcaatagatgatggagtgaattacaataagaaggaa
caaactaaatatgaaagtatgagagaatcttgttcacgtccaggaccatcagttgataaa
actatgaataagaccttgcctttgaaacctagttccaagctggtggctctgaagcaaaaa
gaagaaagcaaaaaaaaggaaagagagagtctgagtgtagcagcaagagagagaaaaact
tcagaaaaggaagaaaaagcaacaccaaagaaagagagagtttctccccaaaagcctgag
tctgtaagtcctgaagactctgaaaagaaacgagtcaactaccaggcctatcgaagcttc
ctcaatcgagagggtccaaaagccttggggtccaaagagataccacaaggaggtgagaac
tgcttagaaggcctcacatttgtaattaccggagtcctggagtctattgaacgagatgag
gccaagtctttgattgaacggtatggaggaaaagtaactggtagtgtcagcaagaagacc
aattatcttgttatgggtcgtgactgtggtcagtctaaatgtgataaggcatccgcttta
gggacaaagattattgatgaagatggcctatttgatctgattcaaactatgcctggcaaa
aagtccaaatacgaattagcagctgaagcagaggtaaacaaagcaaagtcacaaggggag
aagaccccacagaaagctggtgctgccaagagaaaaaacagctcaactaagaaagaaact
gattctaaaaaaaagaaatcaacgcctggaaaggggggaaatctcaaagcattcaagaaa
gaaactgccgaagcgcggaaagttctggacttcacgcagcaagtagcggagagaaaacat
gccacaaaggctgaggagacttctgtttctgagataagcacaggtggaacagagggcttg
ctgtgggtggataaatataagcccatgtcgattaaaacaataatcggacagcaaggagaa
caaagctgtgctaacaaactgttacgatggctccggaactggcacaagaatacgtctgag
gacaaatatgcaaaacccagtaaatttggaggcagagatgatggtactaattttaaggca
gcattgctctcgggtccaccaggtgttggcaaaactactacagctgctttagtttgtgag
gaattgggctacagctatgtggagctgaatgccagtgacactcgtagcaagaacagtttg
aaagaagtggtggctgaatctctaaacaacaccagcatcaaagacttctgttccggaact
tccccttcagttagcacaaagcatgtactgatcatggatgaggtggatggaatggcaggc
aatgaagaccgaggaggaatacaggagttaattggattgatcaggcttacaaagattcct
atcatctgcatgtgtaatgatcggaaccatcccaaaattcgttctctggtccattattgt
tttgatcttcgttttcagagacctcgggtagaacagattaagggtgccatgatgtctgtt
gcatataaagaaggtttaaagatcccaccacctgcgatgaatgagataatcatggcagca
aatcaggatatcaggcaggtgttgcacaatcttagtatgtggtgtgcaaaagataaatcg
ttgacatatgataaggccaaagctgattccagcaaagccaaaaaggacatcaaactgggg
ccctttgatgtcgtccggaaggtgtttgcgactggtgaggagactgctcatatgtctctt
atagacaaatcggaccttttcttccatgactactctctagcacctctctttgttcaggaa
aattatgtacatgtgaagcctgtcgctgctggaaataacttgaaaaagcacttgatgctg
ctgagcagagcagcagatagcatctgtgatggtgatctcgttgacactcagattcgcagg
aagcagaactggagccttcttcctacgcaggctatttatgccagtgttcttccgggagag
ctgatgagaggttacatgtcccagtttcctaacttcccaagctggctggggaaattttca
tctacaggcaaacatgagcgtatcattcaagaactggcaatgcacatgagtctcagaacc
aacacgtgcaagaggacagtgaacatggagtatttgtcatacttacgggacgcaattgtt
agacccttgacaagtttaggagtagaaggtgtgccaaatgctgtaacgtttatggactcc
tactgcttgatgaaagatgatgttgaaaatatcatggaaataagtagctggggaggcaaa
cctagtcccttctctaaactggatcccaaggttaaagcagcttttacacgcacctataac
aaagaggcccatctgactccatatgcactacatgtagtgaagacatctaaacggcgagca
ggatccacactgacttcagaactgaatgaagaattgaatgctgatgaactccagtctgag
gaagagcaagattctattgaaaatgatgcaatgatcaagcaaaaaaaggcaaagtcttcc
aaggtgtcaaaagcagaaaaaagtgaagaaccaaaaatggaagggaaaagaaaagcaaaa
atgaggcgatga
DBGET
integrated database retrieval system
