Gavialis gangeticus (Gharial): 109304328
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Entry
109304328 CDS
T07453
Symbol
SCAF8
Name
(RefSeq) protein SCAF8 isoform X1
KO
K13191
RNA-binding protein 16
Organism
ggn
Gavialis gangeticus (Gharial)
Brite
KEGG Orthology (KO) [BR:
ggn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ggn03021
]
109304328 (SCAF8)
03041 Spliceosome [BR:
ggn03041
]
109304328 (SCAF8)
Transcription machinery [BR:
ggn03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
109304328 (SCAF8)
Spliceosome [BR:
ggn03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
109304328 (SCAF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
109304328
NCBI-ProteinID:
XP_019382351
LinkDB
All DBs
Position
Unknown
AA seq
1400 aa
AA seq
DB search
MEAVKAFNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKV
PGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKN
NVFKSEIIQPLLDMAAGIPPPVVTPVLPTTTAAMSNNTPGTPVTPVTPANVVQSLPDPWM
SQIANTDTLAAVAQILQSPQGQQLQQLIQTLQIQQQKPQPSLLQALDAGLVVQLQALTAQ
LTAAAAAANTLNPLEQSVSFNKKLMDRFDFGEESEHSEEPKKETPTSQMPLVSESVNNSL
FHQLAEQLQQQNLEHLRQQLLEQQQPQKASPEENQEGNFGSEHSASPSQGSSQQQFLEVE
ANLDDSIDIQQQDMDIDEGQDVVEEEIFEQEEKKSAIRSRSRTHSRSRSRSPRKRRSRSR
SGSRKRKHRKRSRSRSRERKRKSSRSYSSERRAREREKERQKKGLPPIRSKTLSVCSTTL
WVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDAYRALQKLSSGSYKI
GSKIIKIAWALNKGVKTEYKQFWDVDLGVSYIPWEKVKVDDLDGFAEGGMIDQETVNTEW
ETVRNSEAAKETVQTTQSATVEKNTVVTTQTEVYTQPVTMLQDFAAWRRGRMTASFPVPA
NRRECSPSPFTAALRLAPVFGKFYPITRIPVAPAVPAVNLVPPAFPVSMSVPPPGYSSIP
PPPFLRASFNPSQPPPGFMPPPVPPVVPPPVVPPPVVPPVVPTSLVQPPLPITQDTIKDV
PFSTLVLPVGTGSSNLATPTLSAGSGFNPLPSSKPEAEEKGSHHTDLQVSSNENVRSVQN
DASSSSGLAGGVPPPSVSSSSGLVGGLPPPSVSSSSGLVGGLPPPSISSSSGLAGGVPPP
SISSSSGLAGGLPPHSVSSSSGLAGGGPPPNVSSSSGHLPGAQPPIVSSSSGVMPGVQPP
IVSSSSGLLPPNISSSSGLLAGVQPPSVSSSSGLMAVPPPNVSSSSGLMGLPPPNISNSS
GLLAMQHPAGIHNMPHLNIGSPRMPGMPLLDIRLGLIPQSPGPRFPLMQPGMPPQRNIPP
PPTILDPSLHPPPRGPFPPGDLFNQTERPFGTPGRQNIDPISNAEKRLPLGGENIQQEGD
RDYRFPPVENRENLNRPSPVDVRDSAGRPPVDPREGLGRPPLEGREHFARPHADMRENYG
RPGLDGLGRREHFGFNTDKHWGQRGDYDEREHHAFPIFGGPKGFHEDRERFRHVNYRFDA
RSGPSWNRGYEQDAHRDFDDRRRPWERQRDRDDRDFNFCREVNGNRFGRERMQNNWIPPP
HTRVFEYFEGATSQRKAENMTQVNGENTETESQPPTVQVQNDPELYEKLASSGEMNKEKS
DTEADIESEPVVESTETEGT
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
atggaggccgtgaaagccttcaacagcgagttatactcgctaaatgattacaaaccaccc
atttccaaggctaaaatgacacagatcaccaaggcagcaatcaaggctataaagttctac
aaacatgttgtacagagtgttgagaaattcattcaaaagtgcaaaccagaatacaaggtg
cctggcctatatgtcattgactctattgtgcgacagtctcggcatcagtttgggcaagaa
aaagatgtgtttgccccaaggttcagcaataatatcatcagcactttccagaatttatac
cgttgtcctggagatgacaagagtaaaattgttagagtgctgaatttatggcagaagaat
aatgtattcaagagtgaaattattcagcctctcttggatatggcagcaggaattcctcct
ccagttgtgaccccagtcttgcctactaccacagctgctatgagcaacaatactccagga
actcctgtgacccctgttactccagctaatgtcgtacaaagtttacctgatccttggatg
tctcagattgctaatacagatacgcttgctgcagtagcacagattttacagagtccacag
ggccaacagcttcagcagttaatacagacgctacaaatacaacagcagaaaccacaacct
tcactgctccaagcactggatgctggtcttgttgttcagttacaggccctcactgcacaa
cttacagctgcagctgctgctgccaacacacttaatccattggaacagagtgtctctttt
aacaagaagctgatggacaggtttgattttggggaagagtctgaacacagtgaagaacct
aaaaaagaaacacctacttcccaaatgcctctagtatctgaatctgtgaacaactcactt
tttcatcaactagctgaacagctccaacaacaaaatttagaacatctccggcagcaactc
cttgagcaacaacagcctcagaaggcaagcccagaggaaaatcaggaaggaaattttggt
tcagagcactctgcatcaccgtcacaaggaagtagccaacagcagtttttagaagtagaa
gcaaacctggatgactcgatagatattcagcaacaggatatggatatagatgaaggacaa
gatgtagtagaagaggagatctttgaacaggaagaaaagaaatcggctattcgttcaaga
tcaagaacacactcaagatctcgttcaaggtcaccaagaaagcgaaggtcaaggtcccgg
tctggttctcgaaaacgtaaacacagaaaacgttcacgctcaagatcaagagaaaggaaa
aggaagtcgtctcggtcatactccagtgaaagaagagctagggaaagggaaaaagagagg
caaaagaaaggattgcctcctataaggtccaaaacactaagtgtctgcagtactactctt
tgggttggtcaagtcgacaagaaagctacacagcaagatttaactaatttgtttgaagaa
tttggacaaatagagtctattaatatgattccccccagaggttgtgcatatgtctgcatg
gttcatagacaagatgcatatcgtgctcttcagaaactaagctctggatcctacaaaatt
ggatctaaaattattaagattgcctgggctttgaataaaggggtgaaaacagagtacaaa
cagttctgggatgtggatcttggagtttcatatataccttgggaaaaggtaaaagtggat
gacttggatggctttgctgaaggaggcatgatcgaccaggagactgtaaacactgaatgg
gaaactgtgagaaactcagaggctgctaaagagactgtccaaactactcagagtgcaact
gtcgagaagaacacggtcgttacaacacaaacagaagtttatactcaaccagtcactatg
ctacaggacttcgctgcatggaggcgtggaaggatgactgccagcttcccagtccctgcc
aataggagggagtgtagtccaagtcctttcacagctgcactcagattggcaccagttttt
ggcaagttttatcctataacaaggatcccagtagctccagctgtgcctgctgttaatcta
gttccaccagcatttcctgtctcaatgtctgtccctcctcctggctatagttcaattcct
ccaccaccattcttgcgtgcaagtttcaatccttcacaaccacctcctggctttatgcca
cctccagtcccacctgttgtgccgccgcctgttgtgccaccacctgttgttccaccagta
gtcccaacatctttagtgcagcctccattaccaattactcaagatacaataaaagatgtt
ccttttagtacccttgttttaccagttggcacaggttctagcaatctggccacgccaacg
ttatcagctggaagtggttttaatcctcttccaagcagtaaaccagaggcagaagaaaaa
ggatctcatcatactgatcttcaggtttcctcaaatgaaaatgttagatctgtccaaaat
gatgcctctagcagctctgggcttgcagggggagtgccgccacccagtgtttccagcagc
tctgggcttgtcggaggactgccgccacccagtgtttccagcagctctgggcttgttgga
ggactgccaccacccagcatctccagcagctctgggcttgcaggtggagtgccaccacct
agcatctccagcagctctggccttgctggaggactgccaccacacagcgtctccagcagc
tctgggcttgcaggaggagggccgccaccaaatgtctctagtagttctggacatttgcca
ggagcacaaccacctattgtctcaagcagctctggagttatgcctggagtgcagcccccc
attgtctcaagcagctctggactactgccacccaacatctcgagtagctcaggacttctg
gcaggagtgcagccacccagtgtttcaagcagctcggggcttatggcagtaccaccaccc
aatgtctcaagtagttctggacttatgggattgccaccaccaaatatttcaaatagttct
ggacttctggcaatgcagcatcccgcaggaattcataacatgcctcatttaaatattggt
agtccaaggatgcctggaatgcccctcttagatatccgtctaggacttataccccagtca
ccaggaccaagatttccattaatgcaacctggaatgccaccacagcgcaatatccctcct
cctccaacaatccttgatccatcccttcatccaccacctagaggtccttttcctccaggg
gatctttttaatcaaactgagagaccttttggaacacctgggagacaaaatattgatccc
atttctaatgcagagaaaagactaccacttggtggtgagaacattcaacaggaaggagac
cgagattatcgttttcctccagtggaaaaccgtgagaatcttaataggccatccccagtg
gatgtcagggattctgctggacgaccaccagtggatccaagagagggtctaggaagacct
ccactggagggaagagaacattttgcaagaccacatgcagatatgagagagaattatgga
agaccaggtctagatggtcttggtcgaagagagcattttggtttcaatacagacaaacac
tggggacagagaggagattatgatgaaagagaacatcatgcctttcctatctttggtggc
cctaaaggctttcatgaggacagggagaggtttcggcatgtaaattacaggtttgatgct
aggagtggtcccagctggaacagaggttatgaacaagatgctcacagagattttgatgac
cgtagaagaccctgggaaagacagagggatagggatgacagagattttaatttctgcaga
gaagtgaatggaaacagatttggaagagagagaatgcagaacaactggatcccccctcca
catacaagggtttttgaatattttgaaggggccacttctcaacgcaaagctgagaatatg
acccaggtaaatggtgaaaatacagagacagaaagtcagccaccaactgtgcaagttcag
aacgatccagaactttatgaaaaactggcatcttcaggcgagatgaacaaagagaagagt
gacacagaagctgatatagaaagtgaaccagtggtagaaagcacagaaactgaggggaca
taa
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