Gavialis gangeticus (Gharial): 109304362
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Entry
109304362 CDS
T07453
Symbol
HBS1L
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
ggn
Gavialis gangeticus (Gharial)
Pathway
ggn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ggn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109304362 (HBS1L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ggn03019
]
109304362 (HBS1L)
Messenger RNA biogenesis [BR:
ggn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
109304362 (HBS1L)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
AAA_22
DO-GTPase2
Motif
Other DBs
NCBI-GeneID:
109304362
NCBI-ProteinID:
XP_019382397
LinkDB
All DBs
Position
Unknown
AA seq
688 aa
AA seq
DB search
MSRHRNVRGYNYDEDFEDEDLYGQSVEDDYCISPSTAAQFIYSRRDKPSVLAEPLAEEYG
HEDAEEPANYFTSNHQLTGVDQARLYSCLDQMREVLAESVPEQVMVEAVLNSKFDVQKAL
DLVLAQDSKGNTKAENECTVITGKAAEGKSRESPSTRIESEVVPKVARMTVSGKKQSMGF
EVPCVVAEENGHGATTSQKRPSSEDTSVTSGLVETVSKSALSSQTTQVSEEQSAAPTPVK
KSSKMKQQIDVKAELEKRQGGKQLLNLVVIGHVDAGKSTLMGHLLYLLGNVNKRTMHKYE
QESKKAGKASFAYAWVLDETGEERERGVTMDVGMTKFETKTKVITLMDAPGHKDFIPNMI
TGAAQADVAILVVDASRGEFEAGFETGGQTREHGLLVRSLGVTQLAVAVNKMDQVNWQQE
RFQEVTSKLGQFLKQAGFKESDVAYIPTSGLGGENLVTKCESSELTKWYKGKCLLEQIDY
FKPPQRSVEKPFRLCVSDVFKDQGSGFCVTGKIEAGYIQVGERLLAMPPNETCTAKGITL
HDEPVDWAAAGDHVSLTLTGMDIIKINVGCVFCDPKEPIRVCTRFRARVLIFNIEVPLTK
GFPVLLHYQTISEPATIRRLLSVLHKNTGEVTKKKPKFLTKGQNALIELQTQRPVALELY
KDFKELGRFMLRYSGSTIAAGVVTEIKE
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcggcacaggaacgtccgaggctacaactacgatgaagattttgaagatgaagac
ctttatggccaatcagtagaagatgattattgtatttctccatcaacagcagctcagttt
atctattcaagacgtgacaagccctctgtgcttgctgagccgttagcagaagaatatggg
catgaagatgctgaagaacctgccaattattttacatctaatcatcagctaactggagtt
gatcaagctcgactttattcatgccttgaccagatgagagaagttcttgcagagtctgta
ccagagcaggtgatggtggaagcagtgctgaatagtaaatttgatgtacagaaagcattg
gatcttgtccttgcacaagatagtaaggggaatacaaaggctgagaatgaatgcacagtc
attacaggaaaggcagcagaaggaaaatcaagggagtccccgtccaccagaattgaatct
gaagttgttccaaaagttgccagaatgactgtgtctggaaagaaacagtctatgggattt
gaagttccatgtgtggttgctgaagagaatggccatggtgctaccacatctcaaaaaaga
ccatcatctgaagataccagtgttacatctgggttagttgagacggtctcaaaatcagct
ctttcatcccaaacaacacaggtgtcagaagagcagagtgcagcacctactccagtgaaa
aagtctagcaagatgaaacaacaaatagatgtgaaagcagaactggagaagaggcaagga
ggaaagcaactgctgaatttggtggtaataggtcatgttgatgcaggcaaaagtactcta
atgggtcatttactctaccttctgggaaatgtgaacaaaagaactatgcacaaatatgaa
caggaatctaaaaaggctggaaaagcttcttttgcctatgcatgggtcttggatgaaact
ggagaagaaagagaaaggggagtaacaatggatgtgggtatgacgaaatttgagacaaag
acaaaagtcattacgttgatggatgctccaggccataaagatttcatcccaaatatgatc
accggagctgcacaggctgatgtggcaatcttggttgtggatgccagcagaggagagttt
gaagcagggtttgagactggtggacagactcgagaacatgggttattggttcgttctctt
ggagtaacacaactggctgttgcagtcaataaaatggaccaggttaattggcaacaggag
agatttcaagaagttaccagtaaacttggccagtttcttaaacaagctggctttaaggag
tctgatgtagcttatatcccgacaagtggtcttggaggtgaaaacctggttacaaaatgt
gaatcaagtgaactcactaaatggtataaggggaaatgtttgctagagcaaattgattat
ttcaagccaccacagagatcagtggaaaaaccattcagattatgtgtttctgatgtcttt
aaagaccaaggatcaggattttgtgtaactggtaaaatagaagcaggctatattcaggtt
ggagagagacttctggcaatgcctcccaatgaaacttgcactgcaaaaggaatcacactg
catgatgaaccagttgattgggctgcagcaggagatcacgttagtctcactttgaccggc
atggatatcatcaaaatcaatgtgggctgtgtattttgtgatcccaaggaacccatcaga
gtctgcacacgtttcagagctcgggtcctcatctttaatattgaggtcccacttactaaa
ggattccctgtgcttttacactatcaaaccataagtgagccagccactatcaggagatta
ttgagtgtccttcacaagaatactggcgaagtcacaaagaaaaaacctaaatttctgact
aaaggacagaatgctttaatagaactacagacacaacggcctgttgctcttgagttgtac
aaagatttcaaggagctaggaaggtttatgttacgctacagtggatccactattgctgca
ggagttgtcacggagattaaagaatga
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