Gavialis gangeticus (Gharial): 109304712
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Entry
109304712 CDS
T07453
Symbol
TAF5L
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
ggn
Gavialis gangeticus (Gharial)
Pathway
ggn03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ggn00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
109304712 (TAF5L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ggn03021
]
109304712 (TAF5L)
03036 Chromosome and associated proteins [BR:
ggn03036
]
109304712 (TAF5L)
Transcription machinery [BR:
ggn03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
109304712 (TAF5L)
Coactivators
SAGA/TFTC/STAGA complex
109304712 (TAF5L)
Chromosome and associated proteins [BR:
ggn03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
109304712 (TAF5L)
STAGA complex
109304712 (TAF5L)
TFTC complex
109304712 (TAF5L)
SAGA complex
109304712 (TAF5L)
SLIK complex
109304712 (TAF5L)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
Beta-prop_CAF1B_HIR1
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
TFIID_NTD2
EIF3I
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
Beta-prop_SCAP
WDR90_beta-prop_4th
ANAPC4_WD40
Beta-prop_RIG_2nd
NBCH_WD40
Beta-prop_IFT140_1st
Beta-prop_SPT8
Beta-prop_HPS5
Beta-prop_Vps41
Beta-prop_DCAF4
Beta-prop_EIPR1
WD40_RFWD3
Beta-prop_WDR19_1st
PROPPIN
PEP5_VPS11_N
eIF2A
Ge1_WD40
Nbas_N
Motif
Other DBs
NCBI-GeneID:
109304712
NCBI-ProteinID:
XP_019383027
LinkDB
All DBs
Position
Unknown
AA seq
589 aa
AA seq
DB search
MKRVRTEQIQMAVSCYLKRRQYVDSEGPLKQGLRLCQTAEEMAANLTVQSESGCASVVSA
APCLAEPQQYEVQFGRLRNFLTDSDSQHSHEVMPLLYPLFVYLHLNMVQHGLKSTVDSFY
SRFHGMFLQNASQKDIIEQLQTTMTIQDILSNFKLRAFLDNKYVIRLQEDSYNYLLRYLQ
SDNNNALCKVLTLHIHLDVQPAKRTDYQLYASGSSSRSESNGLEPADMPTSILQNEAALD
LLQDSIKRVRDGPPSLTTICFYAFYNTEQLLNTAEISPDSKLLAAGFDNSCVKLWSLRSR
KLKSEPHLVDVSQIRLACDVLDEEEEEDDNVGTEMKILRGHCGPVYSTRFLSDSSGLLSC
SEDMSIRYWDLGSFTNTVLYQGHAYPVWDLDISPCSLYFASGSHDRTARLWSFDRTYPLR
IYAGHLADVDCVKFHPNSNYFATGSTDKTVRLWSTQQGSSVRLFTGHRGPVLALAFSPNG
KYLASAGEDQRLKLWDLASGTLYKELRGHTDNITSLTFSPDSSLIASASMDNSVRVWDIR
NTYCNTPADGSSSELVGVYSGQMNNVLSVQFMACNLLLVTGIAQENQEH
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtgtacgcacagaacagattcagatggcagtgtcctgctacctcaagcgtcgt
cagtatgtagactcagaaggtcccctaaaacaagggctgaggctgtgtcagaccgctgaa
gagatggcagctaatctcacagtccaatctgaatctggttgtgccagtgtagtgtctgca
gccccctgcctggcagaaccacagcaatatgaagtacagtttggacgactacgcaatttt
ctcacagattcagattcccagcacagccatgaagtgatgcctcttctgtatcccctcttt
gtctacctccatcttaacatggtccagcacggcctaaagagcacagtggacagtttctac
agccgcttccatggcatgttcttgcagaatgccagtcagaaagatatcattgagcagttg
cagactaccatgactattcaagatatcctgtccaacttcaagctccgggcttttctggac
aacaaatatgtcatccgtcttcaagaggacagctacaactaccttcttcgctacctccaa
agcgacaacaacaatgctctttgcaaagttcttaccttgcacattcacctggatgtgcag
cctgccaagaggacagactaccagctttatgccagcggcagctcctcgcgcagtgaaagc
aatggcctggaacctgccgacatgcctacttccatcctgcagaacgaggcagcgctggac
ttgctgcaggacagcattaagagggtcagggatggccccccttccttaaccaccatctgt
ttctatgccttctataacacagagcagttgctgaacacggccgagatctcaccagacagc
aagctgcttgccgctggatttgataattcttgtgtaaagctgtggagcctgcgatccagg
aagttaaaatctgagccgcatcttgtagatgtgtcccaaatccgcctggcttgtgatgtt
ctggatgaggaggaggaagaggatgacaatgtaggcacagaaatgaagatcctgagagga
cactgtggaccagtgtatagcacaaggttcctgtcagacagttcaggactcttatcttgt
tctgaagatatgtctatcagatactgggaccttggaagctttacaaacactgtgttgtac
caagggcatgcctaccctgtctgggatttggatatcagcccttgcagcctgtactttgcc
agcggttcccacgatcgcacagcgagactctggtcatttgatcggacgtacccactgcgc
atatatgcaggccacttggcagatgtggactgtgtcaagttccaccccaattccaactac
tttgcaacaggctccacagacaaaactgtgaggctctggagtactcagcaagggagctct
gtgcgcctcttcacaggtcaccgcggccctgtgctagcactcgcattttctcccaatggt
aagtacctggcttcagcgggtgaagaccagcggttaaagctgtgggacttggcctctggc
acgctttacaaagaattgagggggcacacggacaacataaccagccttaccttcagcccc
gacagtagtttgattgcctctgcatccatggataattctgttcgggtatgggacatccgg
aacacttactgcaacaccccagcagatggttcttcgagtgaactggttggtgtatatagt
ggacaaatgaataatgtactgagtgtacagtttatggcctgtaaccttcttctagtgact
ggaattgcacaagaaaatcaggaacattaa
DBGET
integrated database retrieval system
