Gavialis gangeticus (Gharial): 109305099
Help
Entry
109305099 CDS
T07453
Symbol
PABPC1
Name
(RefSeq) polyadenylate-binding protein 1 isoform X1
KO
K13126
polyadenylate-binding protein
Organism
ggn
Gavialis gangeticus (Gharial)
Pathway
ggn03015
mRNA surveillance pathway
ggn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ggn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109305099 (PABPC1)
09123 Folding, sorting and degradation
03018 RNA degradation
109305099 (PABPC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ggn03019
]
109305099 (PABPC1)
03041 Spliceosome [BR:
ggn03041
]
109305099 (PABPC1)
Messenger RNA biogenesis [BR:
ggn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
109305099 (PABPC1)
mRNA cycle factors
Stress granule specific factors
109305099 (PABPC1)
Spliceosome [BR:
ggn03041
]
Complex C
Other components
Complex C specific factors
109305099 (PABPC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_7
RRM_10
RRM_5
RBD_RDR6
RRM_occluded
RRM_3
YflT
Motif
Other DBs
NCBI-GeneID:
109305099
NCBI-ProteinID:
XP_019383562
LinkDB
All DBs
Position
Unknown
AA seq
636 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFER
HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN
LDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRA
AYYPTSQLAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSAQ
RVANTSTQTMGPRPAAAATAATPAVRTVPQYKYAAGVRNPQQHLNTQPQVAMQQPAVHVQ
GQEPLTASMLASAPPQEQKQMLGERLFPLIQSMHPTLAGKITGMLLEIDNSELLHMLESP
ESLRSKVDEAVAVLQAHQAKEAAQKAVNNPAGVPSV
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccagcgcgcccagctatcccatggcctcgctgtacgtgggggacctgcacccc
gacgtcactgaggccatgctgtacgagaagttcagccccgccgggcccatcctctccatc
cgcgtctgccgggacatgatcacccgccgctcgctgggctacgcctacgtcaacttccag
cagccagccgacgctgaacgagctttggataccatgaactttgatgtcattaagggcaag
ccggtgcgcattatgtggtctcagcgtgatccatctctacgcaaaagtggtgttggaaac
attttcatcaaaaacttggataaatccattgataataaagctttgtatgatacattttct
gcttttggaaacatcctctcttgtaaggtggtttgtgatgaaaatggatctaagggctat
ggatttgtacattttgagacacaagaagctgctgaaagagctattgaaaaaatgaatggt
atgctgcttaatgaccgcaaagtatttgttggaaggtttaaatctcgtaaagaacgtgag
gcagaacttggagctagagctaaggaatttactaatgtttacatcaaaaattttggagaa
gacatggatgacgaaagacttaaggaactctttggcaagtttgggcctgccttaagtgtg
aaagttatgaccgatgagagtggaaaatccaaaggctttggctttgttagttttgaaaga
catgaagatgcccagaaagctgtggatgagatgaatgggaaagagctcaatggaaagcaa
atctatgttggccgggcccagaaaaaagtggaaaggcaaacagagctcaagcgcaaattt
gaacaaatgaagcaggacaggatcaccagatatcagggagtaaacctttatgtgaaaaat
cttgatgatgggattgatgatgagcgtctacgaaaagaattttctccatttggcacaatc
acaagtgcaaaggtcatgatggaaggtggccgcagcaaagggtttgggtttgtatgcttt
tcttcaccagaagaagccaccaaagcggtcacagaaatgaatggcagaattgtggccact
aagccattatatgtagctctagctcaacgtaaagaggaacgccaggctcatctcaccaac
cagtatatgcagagaatggcaagtgtaagagcagtacccaatcctgtaatcaacccctac
caaccagcacctccgtcaggttatttcatggcagctatcccacagacccagaaccgtgct
gcatactatcctactagccaacttgctcagctcagaccaagtcctcgctggactgctcag
ggtgccagacctcatcctttccagaacatgcctggtgctatccgcccagcagctcccaga
ccaccatttagtaccatgagaccagcttcttcacaagttccacgagtcatgtcagcacaa
cgtgttgctaatacgtcaacacagacgatgggtccgcgtcctgcagcagcagctactgca
gccactcctgctgtgcgcacagttcctcagtacaagtatgctgctggtgttcgtaaccct
cagcaacatcttaacacacagccacaggttgctatgcagcagcctgctgtccatgtgcaa
ggtcaggaaccattgactgcttccatgttggcttctgctcctccacaagaacaaaagcag
atgttaggtgaacggctgtttccacttattcaatccatgcaccctactctggcgggtaaa
atcaccggtatgttgttggagattgacaactctgagctcctccatatgcttgagtctcct
gagtctcttcgttcgaaggttgatgaagctgtagccgtactacaagcccaccaagctaaa
gaggctgctcagaaagcagttaataaccctgctggggttccaagtgtttaa
DBGET
integrated database retrieval system
