KEGG   Gorilla gorilla gorilla (western lowland gorilla): 101138184
Entry
101138184         CDS       T02442                                 
Symbol
VPS39
Name
(RefSeq) vam6/Vps39-like protein isoform X2
  KO
K20183  Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
ggo  Gorilla gorilla gorilla (western lowland gorilla)
Pathway
ggo04140  Autophagy - animal
ggo04142  Lysosome biogenesis
ggo04148  Efferocytosis
ggo05132  Salmonella infection
Brite
KEGG Orthology (KO) [BR:ggo00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04142 Lysosome biogenesis
    101138184 (VPS39)
   04140 Autophagy - animal
    101138184 (VPS39)
   04148 Efferocytosis
    101138184 (VPS39)
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    101138184 (VPS39)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:ggo04131]
    101138184 (VPS39)
Membrane trafficking [BR:ggo04131]
 Endosome - Lysosome transport
  Tethering complex
   Hops complex
    101138184 (VPS39)
SSDB
Motif
Pfam: Vps39_1 CNH zf-Vps39_C TPR_Vps41 Clathrin LIF1_N Beta-prop_RIG_2nd VPS18_solenoid_2nd DUF4145 KCTD11_21_C Beta-prop_WDR36-Utp21_1st Lgl_C EcoR124_C
Other DBs
NCBI-GeneID: 101138184
NCBI-ProteinID: XP_004056089
Ensembl: ENSGGOG00000000372
UniProt: G3RUR6
LinkDB
Position
16:complement(join(42975161..42975236,42976093..42976184,42976443..42976577,42976743..42976892,42977765..42977810,42978041..42978143,42978773..42978901,42979411..42979528,42980123..42980221,42980561..42980634,42980965..42981051,42981175..42981316,42981798..42981941,42984116..42984258,42988119..42988248,42992600..42992720,42992832..42992952,42998899..42999082,43001649..43001741,43002139..43002237,43003495..43003589,43005492..43005534,43005863..43005927,43014247..43014312,43022414..43022486))
AA seq 875 aa
MHDAFEPVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIRKDVGCNRFEVTLEKSNK
NFSKKIQQIHVVSQFKILVSLLENNIYVHDLLTFQQITTVSKAKGASLFTCDLQHTETGE
EVLRMCVAVKKKLQLYFWKDREFHELQGDFSVPDVPKSMAWCENSICVGFKRDYYLIRVD
GKGSIKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGICTQKCALNWTDIPVAME
HQPPYIIAVLPRYVEIRTFEPRLLVQSIELQRPRFITSGGSNIIYVASNHFVWRLIPVPM
ATQIQQLLQDKQFELALQLAEMKDDSDSEKQQQIHHIKNLYAFNLFCQKRFDESMQVFAK
LGTDPTHVMGLYPDLLPTDYRKQLQYPNPLPVLSGAELEKAHLALIDYLTQKRSQLVKKL
NDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHTNVALVAPLLRLENNHCHIEE
SEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTVQYLQHLGTENL
HLIFSYSVWVLRDFPEDGLKIFTEDLPEVESLPRDRVLGFLIENFKGLAIPYLEHIIHVW
EETGSRFHNCLIQLYCEKVQGLMKEYLLSFPAGKTPVPAGEEEGELGEYRQKLLMFLEIS
SYYDPGRLICDFPFDGLLEERALLLGRMGKHEQALFIYVHILKDTRMAEEYCHKHYDQNK
DGNKDVYLSLLRMYLSPPSIHCLGPIKLELLEPKANLQAALQVLELHHSKLDTTKALNLL
PANTQINDIRIFLEKVLEENAQKKRFNQVLKNLLHAEFLRVQEERILHQQVKCIITEEKV
CMVCKKKIGNSAFARYPNGVVVHYFCSKEVNPADT
NT seq 2628 nt   +upstreamnt  +downstreamnt
atgcacgacgctttcgagccagtgccgatcctagaaaagctgcctctgcaaatcgactgt
ctggctgcctgggaggaatggcttcttgtgggaaccaaacaaggacatcttcttctctat
aggattcggaaggacgttggttgcaacagatttgaagtgacactagagaaatccaataag
aacttctccaaaaagattcagcagatccatgtggtttcccagtttaagattctggtcagc
ttgttagaaaataacatttatgtccatgacctattgacatttcaacaaatcactacggtt
tcaaaggcaaagggagcatcactgtttacttgtgacctccagcacacagagaccggtgag
gaggtgttacggatgtgtgtggcagtaaaaaagaagctgcagctctatttctggaaggac
agggaatttcatgaattgcagggggactttagtgtgccagatgtgcccaagtccatggcg
tggtgtgaaaattctatctgtgtgggtttcaagagagactactacctaataagggtggat
ggaaaggggtccatcaaagagctctttccaacaggaaaacagctggagcccttagttgca
cctctggcagatggaaaagtggctgtgggccaggatgatctcaccgtggtactcaatgag
gaagggatctgcacacagaaatgtgccctgaactggacggacataccagtggccatggag
caccagcctccctacatcattgcagtgttgcctcgatatgttgagatccgaacatttgaa
ccgaggcttctggtccaaagcattgaattgcaaaggccccgtttcattacctcaggagga
tcaaacattatctatgtggccagcaatcattttgtttggagactcatccctgtccccatg
gcaacccaaatccaacaacttctccaggacaagcagtttgaattggctctgcagctcgcg
gaaatgaaagatgattctgacagtgaaaagcagcaacaaattcatcacatcaagaacttg
tatgccttcaacctcttctgccagaagcgttttgatgagtccatgcaggtctttgctaaa
cttggcacagatcccacccatgtaatgggcctgtaccctgacctgctgcccacagactac
agaaagcagttgcagtatcccaacccattgcctgtgctctccggggctgaattggagaag
gctcacttagctctgattgactacctgacacagaaacgaagtcaattggtaaagaagctg
aatgactctgatcaccagtcaagcacctccccgctcatggaaggcactcccaccatcaaa
tccaagaagaagctgctgcaaatcatcgacaccaccctgctcaagtgctatctccatacg
aatgtggccctggtggcccccttgctacgcctggagaacaatcactgccacatcgaggag
agcgagcacgtgctgaagaaggctcacaagtacagtgagcttatcatcctgtatgagaag
aaggggctccatgagaaagctctgcaggtgctcgtggaccagtccaagaaagccaactcc
cctctgaaaggccacgagaggacagtgcagtatctgcagcatctgggcacagaaaacctg
catttgattttctcctactcagtgtgggtgctgagagacttcccagaagatggcctgaag
atatttactgaagatctcccggaagtggagtctctgccacgtgatcgagtcctcggcttc
ttaatagagaattttaagggtctggccattccttatctggaacacatcatccatgtttgg
gaggagacaggctctcggttccacaactgcctgatccagctatactgtgagaaggtgcaa
ggtctgatgaaggagtatctcctgtccttccctgcaggcaaaaccccagtcccagctgga
gaggaagagggtgagctgggagaataccggcaaaagctcctcatgttcttggagatttcc
agctactatgatccaggccggctcatctgtgattttccctttgatggcctcttagaagaa
cgagctctcctgttggggcgcatggggaaacatgaacaagctcttttcatttatgtccac
atcttgaaggatacaaggatggctgaggagtactgccacaaacactatgaccaaaacaaa
gatggcaacaaagatgtgtatctgtccctgcttcggatgtacctgtcgccccccagcatt
cactgcctggggccaatcaagctggaactactggagccaaaagccaacctccaggccgct
ctgcaggtcctcgagctgcaccacagcaaactggacaccaccaaggccctcaaccttttg
ccagcaaacactcagatcaatgacatacgcatcttcctggaaaaggtcttggaagaaaat
gcacaaaagaaacggttcaatcaagtgctcaagaaccttctccatgcagaattcctaagg
gtccaggaagagcggattttacaccagcaggtgaagtgcatcatcacagaggagaaggtg
tgcatggtgtgtaagaagaagattgggaacagtgcatttgcaagataccccaatggagtg
gtcgtgcactacttctgttccaaagaggtaaacccagctgacacttga

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